iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Post-translational Modifications (PTMs)
dbPAF	PhosphositePlus
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.50e-10	39.5	375	406

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           +++  f sd +++ ++s++g ++vWD+ + ++
   Q: 375  ISASTFsSDsKRIYTSSGNGEVYVWDVNSRKC 406
           6666799888****************988776 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MPPERRSRTK GDRRAGAMPR RKARPGSGST PGKAARSSQR TLPAGPKAAP SAISAAEEES 60
RLRQRNRLML ENDKPAAERC LEQLVFGDVE DDEDALLRRL RSSRGHLHGS SDDSEVEDEA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCGCCCG AACGCAGGAG CCGGACCAAA GGAGACCGGA GAGCCGGCGC AATGCCGAGG 60
AGGAAAGCCA GACCCGGGAG CGGCAGCACG CCCGGAAAGG CCGCCCGTTC ATCCCAACGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0031965--C:nuclear membrane
GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0003723--F:RNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000184	Aegilops tauschii	38.22	6.00e-78	285.00
IUUC-Aml-002252	Ailuropoda melanoleuca	78.04	0.00e+00	804.00
IUUC-Atr-002575	Amborella trichopoda	41.64	2.00e-74	273.00
IUUC-Aly-006512	Arabidopsis lyrata	36.25	4.00e-74	271.00
IUUC-Ath-007244	Arabidopsis thaliana	38.52	8.00e-72	264.00
IUUC-Ago-007895	Ashbya gossypii	25.73	2.00e-32	133.00
IUUC-Acl-008343	Aspergillus clavatus	25.44	9.00e-33	135.00
IUUC-Afl-008445	Aspergillus flavus	24.80	2.00e-42	167.00
IUUC-Aor-009986	Aspergillus oryzae	24.82	4.00e-40	159.00
IUUC-Ame-011338	Astyanax mexicanus	52.36	2.00e-141	496.00
IUUC-Bgr-012201	Blumeria graminis	28.07	4.00e-39	155.00
IUUC-Bta-013058	Bos taurus	77.92	0.00e+00	791.00
IUUC-Bci-013619	Botrytis cinerea	24.55	3.00e-33	136.00
IUUC-Bdi-014771	Brachypodium distachyon	37.56	5.00e-74	271.00
IUUC-Bol-015230	Brassica oleracea	42.38	3.00e-71	262.00
IUUC-Bra-017041	Brassica rapa	39.90	3.00e-69	255.00
IUUC-Cel-018293	Caenorhabditis elegans	27.68	7.00e-48	184.00
IUUC-Cja-019503	Callithrix jacchus	84.42	0.00e+00	741.00
IUUC-Cfa-020743	Canis familiaris	74.82	0.00e+00	783.00
IUUC-Cpo-021488	Cavia porcellus	82.30	0.00e+00	749.00
IUUC-Cre-022926	Chlamydomonas reinhardtii	33.89	4.00e-59	222.00
IUUC-Csa-023110	Chlorocebus sabaeus	78.64	0.00e+00	811.00
IUUC-Cin-025208	Ciona intestinalis	40.99	5.00e-72	264.00
IUUC-Cme-027351	Cyanidioschyzon merolae	28.42	2.00e-44	173.00
IUUC-Dre-027524	Danio rerio	46.91	6.00e-111	394.00
IUUC-Dno-029243	Dasypus novemcinctus	76.08	0.00e+00	772.00
IUUC-Dor-030110	Dipodomys ordii	67.44	0.00e+00	725.00
IUUC-Dse-031217	Dothistroma septosporum	28.38	2.00e-29	124.00
IUUC-Dme-031999	Drosophila melanogaster	32.90	2.00e-52	200.00
IUUC-Eca-034350	Equus caballus	82.06	0.00e+00	775.00
IUUC-Eeu-034991	Erinaceus europaeus	72.36	0.00e+00	718.00
IUUC-Fal-036614	Ficedula albicollis	58.54	2.00e-149	522.00
IUUC-Gmo-039183	Gadus morhua	48.85	9.00e-122	430.00
IUUC-Gga-040922	Gallus gallus	58.47	4.00e-163	568.00
IUUC-Gac-041475	Gasterosteus aculeatus	52.85	5.00e-125	441.00
IUUC-Gma-043598	Glycine max	35.73	8.00e-75	274.00
IUUC-Ggo-044517	Gorilla gorilla	78.64	0.00e+00	800.00
IUUC-Hsa-045741	Homo sapiens	78.82	0.00e+00	795.00
IUUC-Hvu-047463	Hordeum vulgare	39.43	3.00e-32	130.00
IUUC-Itr-048128	Ictidomys tridecemlineatus	84.21	0.00e+00	783.00
IUUC-Kpa-049335	Komagataella pastoris	28.13	8.00e-43	168.00
IUUC-Lch-049816	Latimeria chalumnae	60.44	1.00e-161	563.00
IUUC-Lpe-051140	Leersia perrieri	36.85	2.00e-74	273.00
IUUC-Loc-051942	Lepisosteus oculatus	54.67	4.00e-145	508.00
IUUC-Laf-054245	Loxodonta africana	77.44	0.00e+00	791.00
IUUC-Meu-056300	Macropus eugenii	65.05	6.00e-140	489.00
IUUC-Mor-057184	Magnaporthe oryzae	24.83	2.00e-29	124.00
IUUC-Mtr-058019	Medicago truncatula	35.92	1.00e-68	254.00
IUUC-Mga-060179	Meleagris gallopavo	61.69	2.00e-151	528.00
IUUC-Mvi-060435	Microbotryum violaceum	33.04	3.00e-50	192.00
IUUC-Mdo-062187	Monodelphis domestica	60.64	5.00e-172	597.00
IUUC-Mmu-063386	Mus musculus	90.40	0.00e+00	933.00
IUUC-Mpu-066084	Mustela putorius furo	77.52	0.00e+00	806.00
IUUC-Mlu-068130	Myotis lucifugus	77.52	0.00e+00	791.00
IUUC-Nle-069743	Nomascus leucogenys	79.42	0.00e+00	730.00
IUUC-Opr-071111	Ochotona princeps	83.82	1.00e-174	606.00
IUUC-Ont-071979	Oreochromis niloticus	55.53	5.00e-138	484.00
IUUC-Ocu-073754	Oryctolagus cuniculus	79.06	0.00e+00	740.00
IUUC-Oba-075007	Oryza barthii	37.21	7.00e-74	271.00
IUUC-Obr-076447	Oryza brachyantha	37.24	1.00e-74	274.00
IUUC-Ogl-077733	Oryza glaberrima	37.21	7.00e-74	271.00
IUUC-Ogu-078828	Oryza glumaepatula	37.21	7.00e-74	271.00
IUUC-Oin-080152	Oryza indica	36.98	1.00e-73	270.00
IUUC-Olo-080983	Oryza longistaminata	41.99	5.00e-73	268.00
IUUC-Oni-082443	Oryza nivara	36.98	2.00e-73	270.00
IUUC-Opu-083771	Oryza punctata	37.56	2.00e-74	273.00
IUUC-Oru-084272	Oryza rufipogon	36.98	2.00e-73	270.00
IUUC-Osa-085885	Oryza sativa	37.27	2.00e-75	276.00
IUUC-Olu-087644	Ostreococcus lucimarinus	25.62	2.00e-17	83.60
IUUC-Oga-088834	Otolemur garnettii	83.23	0.00e+00	780.00
IUUC-Oar-089712	Ovis aries	83.98	0.00e+00	722.00
IUUC-Pan-092561	Papio anubis	78.46	0.00e+00	813.00
IUUC-Ppa-095397	Physcomitrella patens	44.58	9.00e-75	274.00
IUUC-Pfo-097068	Poecilia formosa	49.80	2.00e-134	473.00
IUUC-Pop-099471	Populus trichocarpa	37.37	9.00e-68	251.00
IUUC-Ppe-101446	Prunus persica	35.92	7.00e-72	265.00
IUUC-Pva-102851	Pteropus vampyrus	79.58	0.00e+00	750.00
IUUC-Pgr-103370	Puccinia graminis	27.37	1.00e-41	164.00
IUUC-Ptt-103838	Puccinia triticina	27.58	4.00e-40	159.00
IUUC-Sce-106258	Saccharomyces cerevisiae	29.51	7.00e-41	161.00
IUUC-Sja-107746	Schizosaccharomyces japonicus	28.82	2.00e-45	177.00
IUUC-Spo-108268	Schizosaccharomyces pombe	27.83	1.00e-48	187.00
IUUC-Smo-108806	Selaginella moellendorffii	40.48	6.00e-74	271.00
IUUC-Sit-109706	Setaria italica	37.94	4.00e-75	275.00
IUUC-Sly-111533	Solanum lycopersicum	38.27	7.00e-77	281.00
IUUC-Stu-112853	Solanum tuberosum	38.94	9.00e-80	291.00
IUUC-Sbi-114747	Sorghum bicolor	37.50	2.00e-75	276.00
IUUC-Ssc-115916	Sus scrofa	84.00	0.00e+00	746.00
IUUC-Tgu-117291	Taeniopygia guttata	59.41	2.00e-141	495.00
IUUC-Tru-118724	Takifugu rubripes	47.18	3.00e-125	442.00
IUUC-Tsy-118928	Tarsius syrichta	72.63	8.00e-176	610.00
IUUC-Tca-121229	Theobroma cacao	38.67	2.00e-77	283.00
IUUC-Tae-125218	Triticum aestivum	38.22	9.00e-78	284.00
IUUC-Tur-126082	Triticum urartu	33.74	6.00e-48	184.00
IUUC-Ttr-128904	Tursiops truncatus	76.79	0.00e+00	685.00
IUUC-Vpa-130817	Vicugna pacos	82.32	0.00e+00	770.00
IUUC-Vvi-131395	Vitis vinifera	37.13	7.00e-80	291.00
IUUC-Xtr-132971	Xenopus tropicalis	57.35	3.00e-143	501.00
IUUC-Xma-133391	Xiphophorus maculatus	53.07	2.00e-132	466.00
IUUC-Yli-134613	Yarrowia lipolytica	29.43	3.00e-47	183.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence