iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ppa-095590

Ensembl Protein ID

PP1S25_216V6.2

UniProt Accession

A9RSA3; A9RSA3_PHYPA

Genbank Protein ID

EDQ78161.1

Protein Name

Predicted protein

Genbank Nucleotide ID

DS544914

Gene Name

PHYPADRAFT_160718

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PP1S25_216V6	PP1S25_216V6.2	PP1S25_216V6.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.50e-08	33.9	130	158

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 7    tclaf.sd.tllvsGsdDgtikvWDlrtg 33
           +c++f  d  ll++G+ Dg ++v+ + t+
   Q: 130  NCICFsGDgSLLATGGKDGHLRVFAWPTC 158
           7****96669*************988765 PP

Organism

Physcomitrella patens

Protein Sequence
(Fasta)

MRGLRRVKYT RPSTRNEDVR AICGAWAPRV GSVTDSPSAF VLFGSEDEDE GNAVTVRDFD 60
FDTETLSDII HAISIEDGRP LRLVVHPSGD GVICSFANSC KFFEINSKGS WKLKASEREL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTCGCATCC AACTCAATCC GCCGTGTGAA TTCGACATCG TTTCGGCAGA TCTTCGGAAC 60
CAACTCGCTG CGTTGTTGCA GGTGAAGCCA GAATCACGTC TACAAAGATG AGACATGTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0677--Repeat
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0853--WD repeat

Interpro

IPR002469--Peptidase_S9B_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0030176--C:integral component of endoplasmic reticulum membrane
GO:0005096--F:GTPase activator activity
GO:0051020--F:GTPase binding
GO:0005090--F:Sar guanyl-nucleotide exchange factor activity
GO:0009306--P:protein secretion
GO:0003400--P:regulation of COPII vesicle coating

KEGG

ppp:PHYPADRAFT_160718

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000155	Aegilops tauschii	37.58	6.00e-60	223.00
IUUC-Atr-002477	Amborella trichopoda	40.11	3.00e-73	268.00
IUUC-Bdi-014908	Brachypodium distachyon	35.50	7.00e-59	220.00
IUUC-Cpo-022030	Cavia porcellus	27.82	2.00e-18	86.30
IUUC-Cin-025431	Ciona intestinalis	26.46	3.00e-13	68.90
IUUC-Oba-075552	Oryza barthii	38.52	3.00e-70	258.00
IUUC-Ogl-077345	Oryza glaberrima	38.52	3.00e-70	258.00
IUUC-Ogu-078334	Oryza glumaepatula	38.52	3.00e-70	258.00
IUUC-Oin-079600	Oryza indica	38.80	1.00e-70	259.00
IUUC-Olo-080918	Oryza longistaminata	38.80	9.00e-71	259.00
IUUC-Ome-081986	Oryza meridionalis	39.07	5.00e-71	260.00
IUUC-Oni-082430	Oryza nivara	41.02	1.00e-60	226.00
IUUC-Opu-083902	Oryza punctata	41.30	3.00e-61	228.00
IUUC-Oru-084937	Oryza rufipogon	38.89	4.00e-61	227.00
IUUC-Osa-085881	Oryza sativa	38.80	1.00e-70	259.00
IUUC-Sly-110920	Solanum lycopersicum	46.47	2.00e-65	242.00
IUUC-Stu-112065	Solanum tuberosum	46.10	8.00e-66	243.00
IUUC-Ssc-115282	Sus scrofa	29.22	4.00e-15	75.10
IUUC-Tca-121608	Theobroma cacao	39.24	9.00e-70	256.00
IUUC-Tae-124657	Triticum aestivum	38.60	5.00e-64	237.00
IUUC-Tur-126597	Triticum urartu	42.98	4.00e-52	197.00
IUUC-Xtr-132097	Xenopus tropicalis	27.49	2.00e-09	57.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence