iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-131386

UUCD1 version

UUC-ViV-00219

Ensembl Protein ID

VIT_12s0059g01420.t01

UniProt Accession

D7TEE6; D7TEE6_VITVI

Genbank Protein ID

AGN75070.1; CBI28869.3

Protein Name

COP1

Genbank Nucleotide ID

KC701195; FN595765

Gene Name

COP1; VIT_12s0059g01420

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_12s0059g01420	VIT_12s0059g01420.t01	VIT_12s0059g01420.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.10e-07	31.5	49	113
E3 adaptor/Cullin RING/DCX/DWD	5.50e-26	90.1	548	585
UBD/Beta-Prp	3.20e-41	142.0	372	674

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 6    flCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawcee 71
            lCpI +++ +d   +++G+++   +I  +l+++   cP ++  lt+++l Pn  l +l ++  ++
   Q: 49   SLCPICMQIIKDAFLTACGHSFCYMCIITHLQNKSD-CPCCGVYLTNNQLFPNRLLDKLLKKTSAQ 113
           58*********************************9.*****************998888777666 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+  v+ ++f s++ l+s+s D t+++WD++++ +++
   Q: 548  GHKKAVSYVKFlSNNELASASTDSTLRLWDVKENLPVR 585
           8999*******9889***************99887765 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcvh 88
            + ++++ f  d++l+at++ +++ikv+d+++           + ++s  + + +++++++ +k  ++++   +++ vwd++t++ v+
   Q: 372  ANIVSSIEFDCDDELFATAGVSRRIKVFDFSSVVNeraemhcpVVEMSTRS-KLSCLSWNKCTKnHIASSDYEGIVTVWDVNTRQSVM 458
           56788999999*********************5556777776666665555.599**9999876466666666*************** PP
   S: 89   tlkghedsvlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl.ktgkllr 173
            +++he++++s++fs++  ++lvsGs+d  ++vw ++++  + +++   ++ ++cv+++p +  +++ Gs+D  +  +dl +t   l+
   Q: 459  EYEEHEKRAWSVDFSRTEpSRLVSGSDDCKVKVWCTNQEASVLNIDM--KANICCVKYNPGSsIYIAVGSADHHIHYYDLrNTSHPLH 544
           ****************888***************7777777754444..4559*******9999****************667889** PP
   S: 174  tltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW..dlrsgdllkt 259
            ++g h+++v  ++f sn +el+s+s+d+t++lwd++++  vrt++ght+  + v +s n+e++ +gs+ + ++++   + +  ++++
   Q: 545  IFSG-HKKAVSYVKFLSN-NELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLSVNSEYISCGSETNDVFVYhkEISKPVTWHK 630
           ***9.************8.7********************************************************666677777777 PP
   S: 260  lqlhn.........ssvisvavlsfgdnvlvlgsedskvniwkl 294
           +  +            +is  +++ + + ++++ + ++++++ l
   Q: 631  FGSPDvddldddvgPYFISAVCWKSDSPTMLTANSQGTIKVLTL 674
           77777*******99999999999*****************9987 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MEEVSTGALV PLVKPVMTPS TSVAPTEATG SADEETAEEV GVSNMDKDSL CPICMQIIKD 60
AFLTACGHSF CYMCIITHLQ NKSDCPCCGV YLTNNQLFPN RLLDKLLKKT SAQQISKTAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGGAGG TTTCAACGGG TGCTCTGGTG CCTTTAGTGA AGCCAGTGAT GACTCCCTCA 60
ACCTCCGTAG CTCCGACTGA GGCCACCGGA TCGGCAGATG AAGAGACGGC GGAAGAGGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR002469--Peptidase_S9B_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00400--WD40

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0016604--C:nuclear body
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0046283--P:anthocyanin-containing compound metabolic process
GO:0006281--P:DNA repair
GO:0009649--P:entrainment of circadian clock
GO:0009640--P:photomorphogenesis
GO:0048573--P:photoperiodism, flowering
GO:0010119--P:regulation of stomatal movement
GO:0009641--P:shade avoidance

KEGG

vvi:100248310

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006014	Arabidopsis lyrata	74.74	0.00e+00	1038.00
IUUC-Ath-007636	Arabidopsis thaliana	74.52	0.00e+00	1043.00
IUUC-Ame-011176	Astyanax mexicanus	56.20	2.00e-40	159.00
IUUC-Bol-016380	Brassica oleracea	73.42	0.00e+00	1011.00
IUUC-Bra-017690	Brassica rapa	73.34	0.00e+00	990.00
IUUC-Cin-025375	Ciona intestinalis	37.68	1.00e-116	412.00
IUUC-Dre-028453	Danio rerio	38.82	2.00e-118	419.00
IUUC-Gac-042177	Gasterosteus aculeatus	38.73	2.00e-116	412.00
IUUC-Gma-044187	Glycine max	74.37	0.00e+00	998.00
IUUC-Lch-050420	Latimeria chalumnae	38.60	5.00e-118	417.00
IUUC-Loc-052728	Lepisosteus oculatus	39.35	6.00e-112	397.00
IUUC-Mtr-058555	Medicago truncatula	74.08	0.00e+00	1024.00
IUUC-Ola-086727	Oryzias latipes	38.58	2.00e-118	419.00
IUUC-Pma-094587	Petromyzon marinus	37.30	3.00e-106	377.00
IUUC-Ppa-095401	Physcomitrella patens	62.31	0.00e+00	800.00
IUUC-Pop-099319	Populus trichocarpa	75.44	0.00e+00	1036.00
IUUC-Smo-108893	Selaginella moellendorffii	60.94	0.00e+00	756.00
IUUC-Sly-110895	Solanum lycopersicum	75.77	0.00e+00	1048.00
IUUC-Stu-112386	Solanum tuberosum	72.38	0.00e+00	996.00
IUUC-Ssc-115987	Sus scrofa	26.80	5.00e-20	91.30

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence