iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099102

Ensembl Protein ID

POPTR_0002s10880.1

UniProt Accession

A9PFN4; A9PFN4_POPTR

Genbank Protein ID

ABK95187.1; EEE81624.1

Protein Name

Auxin-responsive protein

Genbank Nucleotide ID

EF147157; CM000338

Gene Name

POPTRDRAFT_830259; POPTR_0002s10880g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s10880	POPTR_0002s10880.1	POPTR_0002s10880.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	2.90e-16	60.6	247	347

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 2    vrvkvsykgeirsfaldlekpgkfedLlkavrt.lt.........................elknsevalkYeDedGDlvtlksDedldka 66
           +++kvs++g+++++++dl+ +  +++L +a+++ +                           l +se+ l+YeD+dGD++ l++D++++++
   Q: 247  LFIKVSMDGAPYLRKVDLRNYSAYQELSSALEKmFScftigqygshgapgremlsesklkdLLHGSEYVLTYEDKDGDWM-LVGDVPWEMF 336
           58*******************************72256799*******************99999***************.********** PP
   S: 67   vsllaskksllrlliqk 83
           ++       ++rl+i+k
   Q: 337  IE------TCKRLRIMK 347
           **......9******97 PP

Organism

Populus trichocarpa

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Protein Sequence
(Fasta)

MSPPLLGVVE EEGHSNVTLL ASPASAESAC LNGLELKERN YMGLSDCSSV DSSAVSAASD 60
ERKTSLNLKA TELRLGLPGS QSPERNHELS LLSSALLDEK PFFPLHPSND GHYSSTQKNV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAATAAGCTT TTGTTACTTT GTGCCAAAAT GGAGGATCCT TAGCTCTCTC TCTCTGGCTA 60
TCTCTCTCTC CTCTACTTCT CTTTCCAAAC TCCCTCTCTC TCTCTGCTTC TAAAACAGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0009734--P:auxin-activated signaling pathway
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

KEGG

pop:POPTR_0002s10880g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002534	Amborella trichopoda	58.79	1.00e-105	375.00
IUUC-Aly-005481	Arabidopsis lyrata	60.84	1.00e-98	352.00
IUUC-Ath-007607	Arabidopsis thaliana	59.94	2.00e-98	351.00
IUUC-Bol-015732	Brassica oleracea	56.55	6.00e-96	343.00
IUUC-Bra-017890	Brassica rapa	51.63	7.00e-76	276.00
IUUC-Gma-043352	Glycine max	70.46	2.00e-135	474.00
IUUC-Mtr-058323	Medicago truncatula	66.01	6.00e-117	413.00
IUUC-Mac-064563	Musa acuminata	51.52	2.00e-79	288.00
IUUC-Ome-081266	Oryza meridionalis	57.33	6.00e-50	190.00
IUUC-Opu-083799	Oryza punctata	62.50	7.00e-46	176.00
IUUC-Ppe-101376	Prunus persica	72.43	2.00e-144	504.00
IUUC-Smo-109586	Selaginella moellendorffii	49.18	3.00e-42	164.00
IUUC-Sly-111221	Solanum lycopersicum	50.81	7.00e-73	266.00
IUUC-Stu-112219	Solanum tuberosum	69.57	2.00e-126	444.00
IUUC-Tca-121378	Theobroma cacao	79.62	2.00e-145	507.00
IUUC-Vvi-131708	Vitis vinifera	79.49	8.00e-136	476.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence