iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111709

Ensembl Protein ID

Solyc12g049100.1.1

UniProt Accession

K4DFJ1; K4DFJ1_SOLLC

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc12g049100.1	Solyc12g049100.1.1	Solyc12g049100.1.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.40e-48	159.8	280	317
UBD/Beta-Prp	8.30e-55	186.8	167	352

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           H ++v+++af ++ ++l+sGs D+ +++W++++g+ +k
   Q: 280  HRGPVFSVAFsPNgKYLASGSADKCMHIWSVKEGNIVK 317
           99*********777******************999887 PP

UBD/Beta-Prp

   S: 12   vitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
           v+ +v++ ++++ +a++ + g+i + +v +   ++++sghe+ v+av+++p+g++l+++s+D+t+k+      +++++++       + ++
   Q: 167  VVIDVDW-QNNDSFAVSLTGGMIYICKVGENRPVKRFSGHENDVNAVNWDPSGSLLASCSDDATVKI------TYTIKWS----PTGAGTS 246
           5556888.666669*****************************************************......3333333....4456677 PP
   S: 103  spsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng 192
           +p++   l+sGs d t+++w++++g  l+  l+ h+g v +v+++p+g++l+sGs+D+++ +W++k g++++t tg  +d +y + ++++g
   Q: 247  NPNQpLLLASGSFDATVKIWNVKQGRLLQ-SLNRHRGPVFSVAFSPNGKYLASGSADKCMHIWSVKEGNIVKTYTG--DDNIYEVCWNKEG 334
           887768999********************.*********************************************9..9************ PP
   S: 193  kelvsgsldgtvklwdlq 210
           + ++++  +++v ++d++
   Q: 335  NKIATCFANNKVCVFDIR 352
           ****************96 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MDINKDSTPY EFPSSDLMVL EGHTSEVFSC AWSPEGSLLA SASRDCTARI WTIGDGPCNS 60
TIRRRAPNVL VLKSLESQTN ETDDLVTTLN WNSEGTLLAT GSHEGKVRMW NRYGELVKNL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATATCA ACAAAGACTC AACCCCATAT GAATTTCCGA GTTCTGATTT AATGGTTTTG 60
GAAGGACATA CGTCAGAGGT TTGACCGCCA CGATTCATAA TAGGCAAAAA TGCTAAGTAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000118--C:histone deacetylase complex
GO:0003714--F:transcription corepressor activity
GO:0016575--P:histone deacetylation
GO:0006357--P:regulation of transcription from RNA polymerase II promoter

Orthology

iUUCD ID

Species

Identity

E-value

Score

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence