iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113885

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G267300

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g030520	Sb04g030520.1	Sb04g030520.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.10e-29	103.1	161	232

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +p+ef+CpIs +lM+dPv++ sG+ty+r++Ie+w+++g  tcP t+ +l++ +++Pn+ +r+li +wc+e++
   Q: 161  PPPEFCCPISTKLMHDPVIITSGQTYEREYIERWFNEGYDTCPRTQMKLENFSMIPNTCMRDLICNWCKEHG 232
           79********************************************************************97 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MVPPALANQI ADVHNDLRDV KFVLDPMEEE AGKAILQMLR QSDASEELEL ETFLHAASKL 60
DLTSPKAVLI ERRAIKKLLD KVSGNDRKKE GVLKFFLYLI KKYGKSISQD SGERNENLQS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTTCCAC CAGCACTAGC TAATCAGGTT AGCTGATATG ATTTCATGTT TTAGTCTTCT 60
TTTTTTTAAT CTGTAAAAGT CAGTTCAATT TCTGCTACTA TTGGTTTCAG AGCAAAATGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0005773--C:vacuole
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_04g030500

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000166	Aegilops tauschii	72.90	0.00e+00	942.00
IUUC-Bdi-014593	Brachypodium distachyon	73.57	0.00e+00	971.00
IUUC-Bra-018043	Brassica rapa	29.19	9.00e-68	250.00
IUUC-Gma-044030	Glycine max	34.73	2.00e-95	342.00
IUUC-Hvu-047756	Hordeum vulgare	73.50	0.00e+00	947.00
IUUC-Lpe-050784	Leersia perrieri	74.47	0.00e+00	936.00
IUUC-Mtr-058085	Medicago truncatula	32.14	1.00e-89	323.00
IUUC-Mac-064841	Musa acuminata	46.03	8.00e-161	560.00
IUUC-Oba-075842	Oryza barthii	72.51	0.00e+00	926.00
IUUC-Obr-076217	Oryza brachyantha	73.38	0.00e+00	927.00
IUUC-Ogl-077921	Oryza glaberrima	72.82	0.00e+00	934.00
IUUC-Ogu-078199	Oryza glumaepatula	72.18	0.00e+00	920.00
IUUC-Oin-079116	Oryza indica	72.97	0.00e+00	937.00
IUUC-Olo-080352	Oryza longistaminata	71.52	0.00e+00	820.00
IUUC-Ome-081110	Oryza meridionalis	72.67	0.00e+00	931.00
IUUC-Oni-082415	Oryza nivara	72.48	0.00e+00	927.00
IUUC-Opu-083658	Oryza punctata	72.37	0.00e+00	903.00
IUUC-Oru-084974	Oryza rufipogon	72.97	0.00e+00	934.00
IUUC-Osa-086052	Oryza sativa	72.82	0.00e+00	935.00
IUUC-Pop-098901	Populus trichocarpa	38.50	6.00e-111	394.00
IUUC-Ppe-101895	Prunus persica	37.38	2.00e-81	295.00
IUUC-Sit-110432	Setaria italica	88.40	0.00e+00	1191.00
IUUC-Sly-111406	Solanum lycopersicum	36.39	1.00e-86	313.00
IUUC-Stu-112174	Solanum tuberosum	35.47	3.00e-86	312.00
IUUC-Tca-121394	Theobroma cacao	36.04	2.00e-92	332.00
IUUC-Tae-123361	Triticum aestivum	73.20	0.00e+00	947.00
IUUC-Tur-126678	Triticum urartu	73.12	0.00e+00	820.00
IUUC-Vvi-130887	Vitis vinifera	36.12	5.00e-94	337.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence