iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114119

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000765

Gene Name

SORBI_006G086400

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb06g017230	Sb06g017230.1	Sb06g017230.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.50e-31	109.1	3	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceen 72
           +p+ f+CpIsl++++dPv+l++G+tydr +Ie+wla g++tcPvt+qpl +  lvPn tlr+li++w+++ 
   Q: 3    IPHLFRCPISLDIFTDPVTLCTGQTYDRPCIERWLAAGHRTCPVTMQPLGDAALVPNRTLRHLIERWLSAD 73
           899****************************************************************9875 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MSIPHLFRCP ISLDIFTDPV TLCTGQTYDR PCIERWLAAG HRTCPVTMQP LGDAALVPNR 60
TLRHLIERWL SADHHHQIPD DDAEEPSLAA LKRCLQSGAG ARDKVAALRK AVALASESDV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGCATCC CGCACCTGTT CCGGTGCCCC ATCAGCCTGG ACATCTTCAC GGACCCGGTG 60
ACGCTGTGCA CGGGGCAGAC GTACGACCGC CCCTGCATCG AGCGCTGGCT CGCCGCCGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_06g017230

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002561	Amborella trichopoda	35.70	3.00e-49	188.00
IUUC-Bdi-014442	Brachypodium distachyon	59.63	1.00e-89	322.00
IUUC-Gma-042908	Glycine max	42.00	9.00e-58	216.00
IUUC-Hvu-047433	Hordeum vulgare	76.55	3.00e-59	219.00
IUUC-Lpe-051453	Leersia perrieri	66.81	3.00e-69	254.00
IUUC-Mtr-058668	Medicago truncatula	39.11	7.00e-52	196.00
IUUC-Mac-064799	Musa acuminata	48.01	3.00e-63	234.00
IUUC-Oba-075982	Oryza barthii	96.00	2.00e-40	157.00
IUUC-Ogl-077204	Oryza glaberrima	61.65	1.00e-80	292.00
IUUC-Ogu-078726	Oryza glumaepatula	62.14	3.00e-80	291.00
IUUC-Oin-079338	Oryza indica	72.22	2.00e-61	229.00
IUUC-Ome-081303	Oryza meridionalis	64.48	8.00e-93	333.00
IUUC-Oni-082692	Oryza nivara	67.72	4.00e-87	314.00
IUUC-Opu-083613	Oryza punctata	65.36	2.00e-99	355.00
IUUC-Oru-084341	Oryza rufipogon	67.23	6.00e-86	310.00
IUUC-Osa-086241	Oryza sativa	66.02	9.00e-90	323.00
IUUC-Pop-099942	Populus trichocarpa	41.98	1.00e-56	213.00
IUUC-Ppe-101486	Prunus persica	39.23	7.00e-56	210.00
IUUC-Sit-110225	Setaria italica	77.64	2.00e-97	348.00
IUUC-Sly-111154	Solanum lycopersicum	38.06	8.00e-62	229.00
IUUC-Stu-112583	Solanum tuberosum	37.10	2.00e-61	228.00
IUUC-Tca-121526	Theobroma cacao	41.92	1.00e-46	179.00
IUUC-Tae-122999	Triticum aestivum	68.55	4.00e-100	357.00
IUUC-Tur-126273	Triticum urartu	70.59	3.00e-22	98.60
IUUC-Vvi-131284	Vitis vinifera	41.91	2.00e-59	222.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence