iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-017174

Ensembl Protein ID

Bra004892.1-P

UniProt Accession

M4CL06; M4CL06_BRARP

Protein Name

Ribosome biogenesis protein BOP1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra004892	Bra004892.1	Bra004892.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.10e-13	49.5	924	962

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gHt+ vt+++   s+  ++sGs Dg++++W++ tg++lk
   Q: 924  GHTGAVTSVSPdcSGQWIASGSADGSVRIWEVETGRCLK 962
           8*********9966699********************97 PP

Organism

Brassica rapa

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MFLCIFVAST VSGYNSKDVK AWCSQTPNPK PCEYFLTHNS GQKPIKSESE FLKISMKLAL 60
ERAILAKSHT STLGPKCRDT REKAAWEDCL KLYDVTVSKI NETMDPNVKC SKTDAQTWLS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTTCTTAT GCATTTTCGT GGCATCGACC GTTTCCGGGT ACAACTCAAA AGACGTGAAA 60
GCATGGTGCA GCCAAACTCC AAACCCTAAA CCATGCGAAT ATTTCTTAAC CCACAACTCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0063--Aspartyl esterase
KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR006633--Carb-bd_sugar_hydrolysis-dom
IPR012334--Pectin_lyas_fold
IPR011050--Pectin_lyase_fold/virulence
IPR033131--Pectinesterase_Asp_AS
IPR000070--Pectinesterase_cat
IPR006501--Pectinesterase_inhib_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00503--PECTINESTERASE_2
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF01095--Pectinesterase
PF04043--PMEI
PF00400--WD40

SMART

SM01035--BOP1NT
SM00722--CASH
SM00856--PMEI
SM00320--WD40

Gene Ontology

GO:0005618--C:cell wall
GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0045330--F:aspartyl esterase activity
GO:0004857--F:enzyme inhibitor activity
GO:0030599--F:pectinesterase activity
GO:0043021--F:ribonucleoprotein complex binding
GO:0042545--P:cell wall modification
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0045490--P:pectin catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	60.97	0.00e+00	718.00
IUUC-Aml-001507	Ailuropoda melanoleuca	42.95	3.00e-140	491.00
IUUC-Atr-003141	Amborella trichopoda	62.00	6.00e-158	550.00
IUUC-Apl-003545	Anas platyrhynchos	42.81	3.00e-122	432.00
IUUC-Aly-005649	Arabidopsis lyrata	78.88	0.00e+00	1127.00
IUUC-Ago-007958	Ashbya gossypii	39.88	6.00e-137	481.00
IUUC-Acl-008344	Aspergillus clavatus	41.45	1.00e-123	437.00
IUUC-Afl-008616	Aspergillus flavus	38.93	8.00e-125	441.00
IUUC-Afu-009083	Aspergillus fumigatus	41.32	3.00e-118	419.00
IUUC-Ani-009365	Aspergillus nidulans	40.76	4.00e-128	452.00
IUUC-Ang-009796	Aspergillus niger	38.48	1.00e-117	417.00
IUUC-Aor-010015	Aspergillus oryzae	38.93	7.00e-125	441.00
IUUC-Ate-010537	Aspergillus terreus	40.74	2.00e-128	452.00
IUUC-Ame-011767	Astyanax mexicanus	44.78	1.00e-62	232.00
IUUC-Bgr-012286	Blumeria graminis	42.08	6.00e-136	478.00
IUUC-Bta-013569	Bos taurus	45.72	6.00e-151	527.00
IUUC-Bci-013820	Botrytis cinerea	41.57	2.00e-125	442.00
IUUC-Bdi-014477	Brachypodium distachyon	65.26	0.00e+00	843.00
IUUC-Bol-016099	Brassica oleracea	91.57	0.00e+00	1312.00
IUUC-Cel-018201	Caenorhabditis elegans	39.77	3.00e-122	432.00
IUUC-Cja-019009	Callithrix jacchus	40.16	4.00e-130	458.00
IUUC-Cfa-020173	Canis familiaris	41.15	1.00e-140	493.00
IUUC-Cpo-021796	Cavia porcellus	44.73	3.00e-151	528.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	48.74	1.00e-168	586.00
IUUC-Csa-023440	Chlorocebus sabaeus	43.92	2.00e-153	536.00
IUUC-Cho-024318	Choloepus hoffmanni	24.05	6.00e-07	49.70
IUUC-Cin-025782	Ciona intestinalis	43.56	3.00e-144	505.00
IUUC-Csv-026352	Ciona savignyi	43.45	1.00e-144	506.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	37.77	3.00e-106	379.00
IUUC-Cne-027004	Cryptococcus neoformans	42.30	2.00e-149	522.00
IUUC-Cme-027242	Cyanidioschyzon merolae	35.54	1.00e-106	380.00
IUUC-Dre-028658	Danio rerio	45.45	1.00e-160	559.00
IUUC-Dno-028883	Dasypus novemcinctus	45.06	1.00e-153	536.00
IUUC-Dor-031031	Dipodomys ordii	43.84	3.00e-155	541.00
IUUC-Dse-031443	Dothistroma septosporum	38.19	2.00e-121	429.00
IUUC-Dme-031786	Drosophila melanogaster	43.06	1.00e-151	530.00
IUUC-Ete-032566	Echinops telfairi	24.05	4.00e-07	50.10
IUUC-Eca-033677	Equus caballus	44.89	3.00e-151	528.00
IUUC-Eeu-035310	Erinaceus europaeus	41.35	1.00e-110	393.00
IUUC-Fca-035888	Felis catus	43.85	5.00e-149	521.00
IUUC-Fal-037438	Ficedula albicollis	44.49	2.00e-125	442.00
IUUC-Fox-037973	Fusarium oxysporum	41.80	1.00e-139	489.00
IUUC-Fso-038187	Fusarium solani	40.47	1.00e-135	476.00
IUUC-Gmo-039114	Gadus morhua	42.38	1.00e-137	483.00
IUUC-Ggr-039746	Gaeumannomyces graminis	40.75	7.00e-136	477.00
IUUC-Gga-040631	Gallus gallus	44.71	4.00e-83	301.00
IUUC-Gac-042582	Gasterosteus aculeatus	45.05	3.00e-147	515.00
IUUC-Gma-044215	Glycine max	70.79	0.00e+00	934.00
IUUC-Ggo-045587	Gorilla gorilla	43.76	8.00e-153	533.00
IUUC-Hsa-046319	Homo sapiens	43.76	5.00e-153	534.00
IUUC-Hvu-047526	Hordeum vulgare	64.94	0.00e+00	824.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	44.39	1.00e-150	526.00
IUUC-Kpa-049221	Komagataella pastoris	40.30	3.00e-127	449.00
IUUC-Lch-049640	Latimeria chalumnae	46.10	3.00e-162	565.00
IUUC-Lpe-051135	Leersia perrieri	63.19	0.00e+00	774.00
IUUC-Loc-051930	Lepisosteus oculatus	47.16	2.00e-164	572.00
IUUC-Lma-053290	Leptosphaeria maculans	42.70	2.00e-129	456.00
IUUC-Laf-053903	Loxodonta africana	42.31	8.00e-135	474.00
IUUC-Mcc-055471	Macaca mulatta	43.60	1.00e-152	533.00
IUUC-Meu-056190	Macropus eugenii	44.73	8.00e-152	530.00
IUUC-Mor-057135	Magnaporthe oryzae	40.73	2.00e-130	459.00
IUUC-Mpo-057475	Magnaporthe poae	39.55	6.00e-127	447.00
IUUC-Mtr-058689	Medicago truncatula	65.82	0.00e+00	863.00
IUUC-Mla-059149	Melampsora laricipopulina	43.87	3.00e-142	498.00
IUUC-Mga-059645	Meleagris gallopavo	39.68	5.00e-47	180.00
IUUC-Mvi-060485	Microbotryum violaceum	41.19	8.00e-126	445.00
IUUC-Mmr-061674	Microcebus murinus	44.25	1.00e-148	519.00
IUUC-Mdo-062973	Monodelphis domestica	44.41	8.00e-157	547.00
IUUC-Mmu-064180	Mus musculus	44.08	2.00e-153	535.00
IUUC-Mac-064535	Musa acuminata	63.52	0.00e+00	644.00
IUUC-Mpu-066406	Mustela putorius furo	45.23	7.00e-157	547.00
IUUC-Mlu-067795	Myotis lucifugus	45.06	4.00e-146	511.00
IUUC-Nfi-068516	Neosartorya fischeri	40.32	2.00e-113	402.00
IUUC-Ncr-068767	Neurospora crassa	41.41	1.00e-122	433.00
IUUC-Ont-071614	Oreochromis niloticus	45.40	1.00e-157	550.00
IUUC-Oba-075980	Oryza barthii	63.36	0.00e+00	780.00
IUUC-Obr-076799	Oryza brachyantha	65.91	0.00e+00	843.00
IUUC-Ogl-077134	Oryza glaberrima	65.58	0.00e+00	824.00
IUUC-Ogu-078655	Oryza glumaepatula	63.78	0.00e+00	803.00
IUUC-Oin-079654	Oryza indica	65.58	0.00e+00	823.00
IUUC-Olo-080706	Oryza longistaminata	63.36	0.00e+00	781.00
IUUC-Oni-082508	Oryza nivara	63.03	0.00e+00	782.00
IUUC-Opu-083707	Oryza punctata	63.52	0.00e+00	783.00
IUUC-Oru-084453	Oryza rufipogon	63.36	0.00e+00	781.00
IUUC-Osa-085811	Oryza sativa	65.42	0.00e+00	823.00
IUUC-Ola-087361	Oryzias latipes	47.28	1.00e-162	566.00
IUUC-Oga-088015	Otolemur garnettii	43.92	1.00e-153	536.00
IUUC-Pan-092306	Papio anubis	43.85	4.00e-152	531.00
IUUC-Psi-093799	Pelodiscus sinensis	24.54	4.00e-08	53.50
IUUC-Pma-094622	Petromyzon marinus	45.04	1.00e-157	549.00
IUUC-Pno-094794	Phaeosphaeria nodorum	39.04	4.00e-120	425.00
IUUC-Pfo-096682	Poecilia formosa	45.34	3.00e-156	545.00
IUUC-Pab-097939	Pongo abelii	42.98	1.00e-134	473.00
IUUC-Pop-099043	Populus trichocarpa	72.87	0.00e+00	865.00
IUUC-Pca-100333	Procavia capensis	45.63	1.00e-156	546.00
IUUC-Ppe-102078	Prunus persica	70.23	0.00e+00	874.00
IUUC-Pgr-103525	Puccinia graminis	43.49	2.00e-131	462.00
IUUC-Ptt-103929	Puccinia triticina	43.75	9.00e-128	451.00
IUUC-Pte-104029	Pyrenophora teres	40.92	2.00e-138	486.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	40.92	5.00e-138	484.00
IUUC-Rno-105248	Rattus norvegicus	45.06	2.00e-154	538.00
IUUC-Sce-106381	Saccharomyces cerevisiae	39.15	2.00e-133	469.00
IUUC-Sha-106519	Sarcophilus harrisii	45.15	7.00e-159	553.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	41.20	4.00e-130	458.00
IUUC-Spo-108071	Schizosaccharomyces pombe	40.64	2.00e-128	452.00
IUUC-Smo-109604	Selaginella moellendorffii	59.24	0.00e+00	728.00
IUUC-Sit-109742	Setaria italica	66.29	0.00e+00	861.00
IUUC-Sly-110970	Solanum lycopersicum	78.65	2.00e-159	555.00
IUUC-Stu-112593	Solanum tuberosum	72.68	0.00e+00	942.00
IUUC-Sar-113123	Sorex araneus	39.94	5.00e-62	230.00
IUUC-Sbi-113945	Sorghum bicolor	66.40	0.00e+00	862.00
IUUC-Sre-115188	Sporisorium reilianum	37.79	1.00e-127	450.00
IUUC-Ssc-115352	Sus scrofa	43.76	3.00e-153	535.00
IUUC-Tru-117685	Takifugu rubripes	47.05	6.00e-161	560.00
IUUC-Tsy-119545	Tarsius syrichta	24.05	3.00e-07	50.40
IUUC-Tni-119982	Tetraodon nigroviridis	46.30	9.00e-155	540.00
IUUC-Tca-121664	Theobroma cacao	75.08	0.00e+00	1012.00
IUUC-Tre-122229	Trichoderma reesei	41.09	1.00e-122	433.00
IUUC-Tvi-122576	Trichoderma virens	41.89	9.00e-124	437.00
IUUC-Tae-124110	Triticum aestivum	65.53	0.00e+00	789.00
IUUC-Tur-126781	Triticum urartu	60.97	0.00e+00	700.00
IUUC-Tme-127080	Tuber melanosporum	44.19	2.00e-154	538.00
IUUC-Uma-129556	Ustilago maydis	38.62	5.00e-126	445.00
IUUC-Vda-129715	Verticillium dahliae	40.49	1.00e-128	454.00
IUUC-Vvi-131211	Vitis vinifera	74.30	0.00e+00	949.00
IUUC-Xma-133883	Xiphophorus maculatus	45.54	4.00e-151	528.00
IUUC-Yli-134438	Yarrowia lipolytica	39.97	1.00e-123	437.00
IUUC-Zma-135341	Zea mays	51.49	0.00e+00	655.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence