iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cne-027004

Ensembl Protein ID

AAW41647

UniProt Accession

P0CS34; Q55YA2; Q5KLN6; ERB1_CRYNJ

Genbank Protein ID

AAW41647.1

Protein Name

Ribosome biogenesis protein ERB1; Eukaryotic ribosome biogenesis protein 1

Genbank Nucleotide ID

AE017342

Gene Name

ERB1; CNB04640

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CNB04640	AAW41647	AAW41647

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.90e-15	53.8	486	516

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtclaf.sd.tllvsGsdDgtikvWDlrtgv 34
           v++++  +d   ++sGs Dg+++vWDl  g+
   Q: 486  VRSVSTsPDgQWIASGSEDGVVRVWDLGNGR 516
           888888889899**************97766 PP

Organism

Cryptococcus neoformans

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MAPQPLKVGT SKLSKMVKSA PKTAGKAKKR AVEQVSEESD EEFGDQGSGI DMSDDEEEVD 60
GDDEEDEDEA FPEFDSELED NDQEEASDEE QDEQDTSDES EIVEEDSDSE SGYNTSDIER 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAACCGGT CAAGATGGCA CCCCAACCGC TCAAGGTGGG AACTTCAAAA CTGTCCAAGA 60
TGGTCAAATC AGCCCCCAAA ACCGCTGGAA AGGCAAAGAA GCGAGCAGTA GAGCAGGTGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0070180--F:large ribosomal subunit rRNA binding
GO:0043021--F:ribonucleoprotein complex binding
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

cne:CNB04640

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	41.23	8.00e-121	425.00
IUUC-Aml-001507	Ailuropoda melanoleuca	41.34	6.00e-147	512.00
IUUC-Atr-003141	Amborella trichopoda	39.41	2.00e-82	298.00
IUUC-Apl-003545	Anas platyrhynchos	44.35	8.00e-140	488.00
IUUC-Aly-005649	Arabidopsis lyrata	43.84	8.00e-150	522.00
IUUC-Ath-007625	Arabidopsis thaliana	44.23	6.00e-144	502.00
IUUC-Ago-007958	Ashbya gossypii	47.73	0.00e+00	652.00
IUUC-Acl-008344	Aspergillus clavatus	48.57	6.00e-174	602.00
IUUC-Afl-008616	Aspergillus flavus	48.27	2.00e-172	597.00
IUUC-Afu-009083	Aspergillus fumigatus	48.27	5.00e-167	579.00
IUUC-Ani-009365	Aspergillus nidulans	48.12	3.00e-172	597.00
IUUC-Ang-009796	Aspergillus niger	43.95	2.00e-167	580.00
IUUC-Aor-010015	Aspergillus oryzae	48.27	3.00e-172	597.00
IUUC-Ate-010537	Aspergillus terreus	48.04	8.00e-173	598.00
IUUC-Ame-011767	Astyanax mexicanus	53.81	3.00e-77	279.00
IUUC-Bgr-012286	Blumeria graminis	49.92	0.00e+00	626.00
IUUC-Bta-013569	Bos taurus	45.06	6.00e-158	549.00
IUUC-Bci-013820	Botrytis cinerea	48.08	7.00e-170	588.00
IUUC-Bdi-014477	Brachypodium distachyon	43.49	1.00e-145	508.00
IUUC-Bol-016099	Brassica oleracea	42.92	1.00e-149	521.00
IUUC-Bra-017174	Brassica rapa	42.77	5.00e-150	523.00
IUUC-Cel-018201	Caenorhabditis elegans	38.74	2.00e-124	437.00
IUUC-Cja-019009	Callithrix jacchus	39.33	5.00e-127	446.00
IUUC-Cfa-020173	Canis familiaris	41.57	3.00e-143	500.00
IUUC-Cpo-021796	Cavia porcellus	45.06	7.00e-157	545.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	41.64	3.00e-75	274.00
IUUC-Csa-023440	Chlorocebus sabaeus	45.38	9.00e-164	568.00
IUUC-Cin-025782	Ciona intestinalis	43.45	8.00e-161	558.00
IUUC-Csv-026352	Ciona savignyi	43.01	3.00e-153	533.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	44.89	6.00e-141	492.00
IUUC-Cme-027242	Cyanidioschyzon merolae	36.91	1.00e-124	438.00
IUUC-Dre-028658	Danio rerio	45.06	2.00e-167	580.00
IUUC-Dno-028883	Dasypus novemcinctus	45.45	1.00e-163	568.00
IUUC-Dor-031031	Dipodomys ordii	44.38	1.00e-162	564.00
IUUC-Dse-031443	Dothistroma septosporum	48.89	2.00e-180	623.00
IUUC-Dme-031786	Drosophila melanogaster	43.93	1.00e-157	548.00
IUUC-Eca-033677	Equus caballus	44.90	1.00e-160	558.00
IUUC-Eeu-035310	Erinaceus europaeus	40.62	1.00e-119	421.00
IUUC-Fca-035888	Felis catus	44.59	1.00e-160	557.00
IUUC-Fal-037438	Ficedula albicollis	45.64	9.00e-126	441.00
IUUC-Fox-037973	Fusarium oxysporum	48.80	0.00e+00	650.00
IUUC-Fso-038187	Fusarium solani	50.38	0.00e+00	657.00
IUUC-Gmo-039114	Gadus morhua	44.32	9.00e-152	528.00
IUUC-Ggr-039746	Gaeumannomyces graminis	46.65	7.00e-180	622.00
IUUC-Gga-040631	Gallus gallus	46.94	2.00e-91	327.00
IUUC-Gac-042582	Gasterosteus aculeatus	45.68	2.00e-159	553.00
IUUC-Gma-044215	Glycine max	42.99	9.00e-144	501.00
IUUC-Ggo-045587	Gorilla gorilla	45.41	1.00e-163	568.00
IUUC-Hsa-046319	Homo sapiens	45.38	9.00e-164	568.00
IUUC-Hvu-047526	Hordeum vulgare	42.41	1.00e-137	481.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	44.43	3.00e-161	560.00
IUUC-Kpa-049221	Komagataella pastoris	45.64	7.00e-175	605.00
IUUC-Lch-049640	Latimeria chalumnae	45.05	1.00e-175	608.00
IUUC-Lpe-051135	Leersia perrieri	45.03	4.00e-78	283.00
IUUC-Loc-051930	Lepisosteus oculatus	46.28	5.00e-174	602.00
IUUC-Lma-053290	Leptosphaeria maculans	49.69	2.00e-177	613.00
IUUC-Laf-053903	Loxodonta africana	41.07	3.00e-137	480.00
IUUC-Mcc-055471	Macaca mulatta	45.38	6.00e-164	568.00
IUUC-Meu-056190	Macropus eugenii	44.75	2.00e-159	553.00
IUUC-Mor-057135	Magnaporthe oryzae	47.13	1.00e-172	598.00
IUUC-Mpo-057475	Magnaporthe poae	45.88	3.00e-167	580.00
IUUC-Mtr-058689	Medicago truncatula	40.81	5.00e-129	452.00
IUUC-Mla-059149	Melampsora laricipopulina	58.67	0.00e+00	837.00
IUUC-Mga-059645	Meleagris gallopavo	41.25	8.00e-55	204.00
IUUC-Mvi-060485	Microbotryum violaceum	49.93	0.00e+00	683.00
IUUC-Mmr-061674	Microcebus murinus	44.55	3.00e-159	553.00
IUUC-Mdo-062973	Monodelphis domestica	45.47	6.00e-165	572.00
IUUC-Mmu-064180	Mus musculus	44.11	1.00e-161	561.00
IUUC-Mac-064535	Musa acuminata	39.12	1.00e-86	312.00
IUUC-Mpu-066406	Mustela putorius furo	45.54	6.00e-162	562.00
IUUC-Mlu-067795	Myotis lucifugus	45.43	3.00e-153	533.00
IUUC-Nfi-068516	Neosartorya fischeri	48.42	5.00e-162	562.00
IUUC-Ncr-068767	Neurospora crassa	49.27	9.00e-172	595.00
IUUC-Opr-071084	Ochotona princeps	37.59	2.00e-55	207.00
IUUC-Ont-071614	Oreochromis niloticus	45.64	7.00e-169	585.00
IUUC-Oba-075980	Oryza barthii	38.57	3.00e-115	407.00
IUUC-Obr-076799	Oryza brachyantha	43.74	2.00e-146	510.00
IUUC-Ogl-077134	Oryza glaberrima	44.06	6.00e-141	492.00
IUUC-Ogu-078655	Oryza glumaepatula	42.16	8.00e-134	468.00
IUUC-Oin-079654	Oryza indica	44.06	1.00e-140	491.00
IUUC-Olo-080706	Oryza longistaminata	33.22	4.00e-78	283.00
IUUC-Ome-081716	Oryza meridionalis	45.10	4.00e-78	283.00
IUUC-Oni-082508	Oryza nivara	41.77	2.00e-129	454.00
IUUC-Opu-083707	Oryza punctata	45.10	1.00e-77	281.00
IUUC-Oru-084453	Oryza rufipogon	33.22	4.00e-78	283.00
IUUC-Osa-085811	Oryza sativa	43.90	1.00e-140	491.00
IUUC-Ola-087361	Oryzias latipes	47.83	1.00e-172	598.00
IUUC-Oga-088015	Otolemur garnettii	44.11	3.00e-164	570.00
IUUC-Oar-090058	Ovis aries	54.22	5.00e-54	203.00
IUUC-Ptr-090631	Pan troglodytes	44.62	7.00e-67	245.00
IUUC-Pan-092306	Papio anubis	45.63	1.00e-163	568.00
IUUC-Pma-094622	Petromyzon marinus	44.39	4.00e-170	589.00
IUUC-Pno-094794	Phaeosphaeria nodorum	45.54	2.00e-167	580.00
IUUC-Ppa-095528	Physcomitrella patens	39.95	1.00e-88	318.00
IUUC-Pfo-096682	Poecilia formosa	45.44	2.00e-172	597.00
IUUC-Pab-097939	Pongo abelii	43.35	1.00e-140	491.00
IUUC-Pop-099043	Populus trichocarpa	45.28	2.00e-139	486.00
IUUC-Pca-100333	Procavia capensis	43.47	3.00e-156	543.00
IUUC-Ppe-102078	Prunus persica	42.09	3.00e-139	486.00
IUUC-Pgr-103525	Puccinia graminis	54.87	0.00e+00	780.00
IUUC-Ptt-103929	Puccinia triticina	56.12	0.00e+00	754.00
IUUC-Pte-104029	Pyrenophora teres	49.00	0.00e+00	642.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	48.77	0.00e+00	639.00
IUUC-Rno-105248	Rattus norvegicus	44.90	9.00e-163	565.00
IUUC-Sce-106381	Saccharomyces cerevisiae	46.88	0.00e+00	650.00
IUUC-Sha-106519	Sarcophilus harrisii	45.25	1.00e-164	570.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	45.91	1.00e-161	561.00
IUUC-Spo-108071	Schizosaccharomyces pombe	45.01	2.00e-160	557.00
IUUC-Smo-109604	Selaginella moellendorffii	44.48	1.00e-142	498.00
IUUC-Sit-110551	Setaria italica	43.42	1.00e-141	494.00
IUUC-Sly-110970	Solanum lycopersicum	44.93	1.00e-79	288.00
IUUC-Stu-112593	Solanum tuberosum	43.24	2.00e-146	511.00
IUUC-Sar-113123	Sorex araneus	54.66	2.00e-70	256.00
IUUC-Sbi-113945	Sorghum bicolor	42.54	6.00e-145	506.00
IUUC-Sre-115188	Sporisorium reilianum	47.86	0.00e+00	694.00
IUUC-Ssc-115352	Sus scrofa	44.94	1.00e-159	555.00
IUUC-Tru-117685	Takifugu rubripes	46.31	2.00e-174	603.00
IUUC-Tni-119982	Tetraodon nigroviridis	45.31	5.00e-166	575.00
IUUC-Tca-121664	Theobroma cacao	42.52	3.00e-149	520.00
IUUC-Tre-122229	Trichoderma reesei	47.53	2.00e-161	560.00
IUUC-Tvi-122576	Trichoderma virens	49.10	1.00e-168	585.00
IUUC-Tae-124110	Triticum aestivum	42.47	4.00e-131	459.00
IUUC-Tur-126781	Triticum urartu	40.60	5.00e-118	416.00
IUUC-Tme-127080	Tuber melanosporum	53.41	0.00e+00	708.00
IUUC-Ttr-128514	Tursiops truncatus	40.76	3.00e-100	357.00
IUUC-Uma-129556	Ustilago maydis	46.75	0.00e+00	696.00
IUUC-Vda-129715	Verticillium dahliae	47.81	2.00e-173	600.00
IUUC-Vvi-131211	Vitis vinifera	42.43	6.00e-137	479.00
IUUC-Xma-133883	Xiphophorus maculatus	46.15	6.00e-168	582.00
IUUC-Yli-134438	Yarrowia lipolytica	44.28	2.00e-162	564.00
IUUC-Zma-135341	Zea mays	38.30	3.00e-79	287.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence