iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121615

Ensembl Protein ID

EOX95252

UniProt Accession

A0A061DS90; A0A061DS90_THECC

Genbank Protein ID

EOX95252.1

Protein Name

WD40/YVTN repeat-like-containing domain,Bromodomain isoform 2

Genbank Nucleotide ID

CM001879

Gene Name

TCM_004804

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_004804	EOX95252	EOX95252
TCM_004804	EOX95253	EOX95253
TCM_004804	EOX95251	EOX95251

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.20e-26	91.2	324	363
UBD/Beta-Prp	2.30e-43	149.5	235	500

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sdtl....lvsGsdDgtikvWDlrtgvl 35
           gHt+ vt++af   +       l+s+sdDgt+++WD r  ++
   Q: 324  GHTGAVTAIAFsprP--AfafqLLSSSDDGTCRIWDARFSHC 363
           8**********8652..234459*************876665 PP

UBD/Beta-Prp

   S: 2    iktlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
           ik+l+gh+ +v +   f +++++++tgs+d+ +k+w+++t  +l+s  ghe+ +t++  s++  + +++s+D +i+vw l +g +v++l+gh+  v++++f
   Q: 235  IKKLRGHRNAVYC-AIFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPDGLPVSVLRGHTGAVTAIAF 334
           5678888887666.999************************************************************************************ PP
   S: 103  sp..sg.dklvsGshdrtirvwdletgqclee........................tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl......ktgk 170
           sp       l+s s+d t r+wd +   c+ +                         + ++++ + c +++ +g ++v+Gs D++ r+W+        +++
   Q: 335  SPrpAFaFQLLSSSDDGTCRIWDARFSHCSPQiylpkpseavtgrsnfpsnngpssSNVPQNHQILCCAFNVNGTVFVTGSSDTFARVWSAckpstdDSQQ 435
           **76334789*********************************************9777777779999999999***********************999* PP
   S: 171  llrtl..tgghtdsvyslsfdsng.........................kelvsgsldgtvklwd 208
            +++l    gh+++v+ ++f+                              +v++s+dg+ ++w 
   Q: 436  PVHELdvLAGHENDVNYVQFSGCAvpsrssmsdtkeenvpkfknswfcqDNIVTCSRDGSAIIWI 500
           *****99666*********666666666677888899999999999**99**************5 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MDWKCSSSAG ASSLCKAPLN VSTTMPEKAL VEQQRRVTDH AAKTNVDIDL REIYFLIMQF 60
LSAGPCQRTF EQLSNELLEH QLLPRRYHAW FSRSGAHSGN KNDDGISFPL SYNNLVERYP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTCAAGCTT TGTCCAAAAA TGTATTCTTT TTTCTTTTTA TCATCCCTCC ATTTCCGTGT 60
TCGTTTAGTT CTTTTCTCGT ACGCAAAAAC CCCGACTCCA AATTCTCCCA GAAAACTAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR001487--Bromodomain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00297--BROMO
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001113	Aegilops tauschii	46.15	0.00e+00	1230.00
IUUC-Aml-001881	Ailuropoda melanoleuca	30.72	2.00e-74	274.00
IUUC-Apl-003700	Anas platyrhynchos	30.63	7.00e-64	239.00
IUUC-Aca-004474	Anolis carolinensis	31.41	8.00e-80	292.00
IUUC-Aly-006517	Arabidopsis lyrata	75.06	0.00e+00	1240.00
IUUC-Ath-006577	Arabidopsis thaliana	75.29	0.00e+00	1226.00
IUUC-Bdi-014797	Brachypodium distachyon	44.62	0.00e+00	1199.00
IUUC-Bol-016525	Brassica oleracea	71.89	0.00e+00	1198.00
IUUC-Cja-018868	Callithrix jacchus	31.06	5.00e-80	292.00
IUUC-Cfa-021037	Canis familiaris	30.33	4.00e-76	280.00
IUUC-Cpo-021934	Cavia porcellus	30.04	3.00e-75	277.00
IUUC-Cre-023003	Chlamydomonas reinhardtii	32.57	2.00e-34	140.00
IUUC-Csa-023618	Chlorocebus sabaeus	31.56	5.00e-80	292.00
IUUC-Cin-025702	Ciona intestinalis	34.59	4.00e-28	117.00
IUUC-Csv-025813	Ciona savignyi	27.12	2.00e-57	216.00
IUUC-Dre-028029	Danio rerio	30.64	9.00e-77	281.00
IUUC-Dno-030048	Dasypus novemcinctus	30.97	5.00e-73	269.00
IUUC-Dor-030195	Dipodomys ordii	34.12	2.00e-32	134.00
IUUC-Dme-031752	Drosophila melanogaster	27.87	5.00e-72	266.00
IUUC-Ete-032717	Echinops telfairi	35.13	5.00e-40	160.00
IUUC-Fca-036099	Felis catus	30.81	8.00e-75	275.00
IUUC-Fal-037307	Ficedula albicollis	30.67	2.00e-77	285.00
IUUC-Gga-040865	Gallus gallus	30.45	7.00e-76	279.00
IUUC-Gma-042820	Glycine max	57.10	0.00e+00	1686.00
IUUC-Hsa-046350	Homo sapiens	30.14	7.00e-76	279.00
IUUC-Lch-049662	Latimeria chalumnae	30.07	9.00e-82	299.00
IUUC-Loc-052672	Lepisosteus oculatus	31.88	6.00e-79	289.00
IUUC-Laf-053848	Loxodonta africana	30.12	3.00e-75	277.00
IUUC-Mcc-054638	Macaca mulatta	29.91	2.00e-75	278.00
IUUC-Meu-056321	Macropus eugenii	29.93	3.00e-53	204.00
IUUC-Mtr-057637	Medicago truncatula	54.49	0.00e+00	1586.00
IUUC-Mga-060165	Meleagris gallopavo	30.33	2.00e-74	274.00
IUUC-Mmr-061227	Microcebus murinus	30.26	2.00e-76	281.00
IUUC-Mdo-062074	Monodelphis domestica	29.91	3.00e-76	280.00
IUUC-Mmu-064075	Mus musculus	30.71	2.00e-76	281.00
IUUC-Mac-065343	Musa acuminata	53.23	0.00e+00	1577.00
IUUC-Mpu-066628	Mustela putorius furo	30.97	3.00e-76	280.00
IUUC-Mlu-068082	Myotis lucifugus	30.67	1.00e-74	275.00
IUUC-Ont-072221	Oreochromis niloticus	32.29	2.00e-81	297.00
IUUC-Oan-072954	Ornithorhynchus anatinus	30.80	2.00e-82	301.00
IUUC-Oba-075709	Oryza barthii	51.20	0.00e+00	1430.00
IUUC-Obr-076619	Oryza brachyantha	52.28	0.00e+00	1466.00
IUUC-Ogl-077493	Oryza glaberrima	44.14	0.00e+00	1167.00
IUUC-Olo-080755	Oryza longistaminata	43.71	0.00e+00	1132.00
IUUC-Oni-082991	Oryza nivara	43.13	0.00e+00	1110.00
IUUC-Opu-083233	Oryza punctata	51.47	0.00e+00	1454.00
IUUC-Oru-085195	Oryza rufipogon	51.08	0.00e+00	1423.00
IUUC-Ola-086648	Oryzias latipes	31.82	2.00e-80	294.00
IUUC-Olu-087745	Ostreococcus lucimarinus	32.71	2.00e-76	280.00
IUUC-Oga-089053	Otolemur garnettii	30.67	6.00e-74	272.00
IUUC-Oar-090042	Ovis aries	31.10	1.00e-74	275.00
IUUC-Pan-092444	Papio anubis	30.14	8.00e-76	279.00
IUUC-Pma-094427	Petromyzon marinus	33.96	9.00e-40	156.00
IUUC-Ppa-095793	Physcomitrella patens	57.67	0.00e+00	889.00
IUUC-Pfo-096191	Poecilia formosa	31.25	5.00e-79	289.00
IUUC-Pab-098402	Pongo abelii	31.56	7.00e-80	292.00
IUUC-Pop-099672	Populus trichocarpa	70.85	0.00e+00	1311.00
IUUC-Pca-101128	Procavia capensis	30.74	4.00e-65	243.00
IUUC-Ppe-101283	Prunus persica	69.96	0.00e+00	1335.00
IUUC-Pva-102512	Pteropus vampyrus	30.24	1.00e-74	275.00
IUUC-Rno-105687	Rattus norvegicus	30.33	9.00e-76	279.00
IUUC-Sha-106680	Sarcophilus harrisii	30.59	5.00e-76	280.00
IUUC-Sit-110017	Setaria italica	45.02	0.00e+00	1184.00
IUUC-Sly-111348	Solanum lycopersicum	68.54	0.00e+00	1080.00
IUUC-Sar-113004	Sorex araneus	30.39	2.00e-65	244.00
IUUC-Sbi-114195	Sorghum bicolor	71.92	0.00e+00	866.00
IUUC-Ssc-115461	Sus scrofa	30.90	6.00e-69	256.00
IUUC-Tgu-116513	Taeniopygia guttata	30.64	3.00e-78	287.00
IUUC-Tru-117625	Takifugu rubripes	31.62	1.00e-78	288.00
IUUC-Tsy-119003	Tarsius syrichta	28.70	3.00e-61	230.00
IUUC-Tni-120716	Tetraodon nigroviridis	31.73	4.00e-79	290.00
IUUC-Tae-125478	Triticum aestivum	50.80	0.00e+00	1466.00
IUUC-Tur-126809	Triticum urartu	48.60	0.00e+00	1427.00
IUUC-Ttr-128561	Tursiops truncatus	29.76	4.00e-71	263.00
IUUC-Vpa-130160	Vicugna pacos	30.88	2.00e-70	260.00
IUUC-Vvi-131332	Vitis vinifera	72.26	0.00e+00	1420.00
IUUC-Xtr-132717	Xenopus tropicalis	30.95	4.00e-79	289.00
IUUC-Xma-134120	Xiphophorus maculatus	31.53	3.00e-79	289.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence