iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDl 30
           H+++v+ +++  +  t l+s++ D  ++vWDl
   Q: 303  HEGEVFQVEWdpNHeTVLASSGEDRRLMVWDL 334
           9**********644799**************8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Protein Sequence
(Fasta)

MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF 60
GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ DPFIPKVEIR QRIRVDGEVN 120

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Nucleotide Sequence
(Fasta)

CAGCCCTTGA TCAGCTCTGT GTATTTTTGG CGGGAAAATC AACCAGAAAA ACCCTCGAAG 60
ATCAGCGAGA GAGAGAGAAG TAGATTGAGA GGCGAGAGAG ATAATGGCAG ATGAAGGTAA 120

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Sequence Source

Ensembl

Keyword

KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0016569--P:covalent chromatin modification
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

KEGG

ath:AT2G16780

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005708	Arabidopsis lyrata	95.90	0.00e+00	833.00
IUUC-Bol-016584	Brassica oleracea	91.50	0.00e+00	751.00
IUUC-Bra-016771	Brassica rapa	91.48	0.00e+00	776.00
IUUC-Gma-043256	Glycine max	65.54	6.00e-148	516.00
IUUC-Pop-099884	Populus trichocarpa	70.73	1.00e-176	611.00
IUUC-Ppe-101659	Prunus persica	69.70	2.00e-162	564.00
IUUC-Sly-111542	Solanum lycopersicum	71.54	1.00e-163	568.00
IUUC-Stu-112318	Solanum tuberosum	70.83	4.00e-159	553.00
IUUC-Tca-121803	Theobroma cacao	77.61	0.00e+00	667.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence