iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006708

UUCD1 version

UUC-ArT-01318

Ensembl Protein ID

AT4G38140.1

UniProt Accession

Q9SZL4; A2RVT3; ATL18_ARATH

Genbank Protein ID

CAB37554.1; CAB80479.1; AEE86883.1; ABN04812.1

Protein Name

RING-H2 finger protein ATL18; RING-type E3 ubiquitin transferase ATL18

Genbank Nucleotide ID

AL035538; AL161593; CP002687; BT030074

Gene Name

ATL18; At4g38140; F20D10.260

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G38140	AT4G38140.1	AT4G38140.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	8.40e-09	36.7	62	105

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg...plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl +f+ +   +++ +C H+fh +C++ w     + +++ +CPlCr
   Q: 62   CPICLVEFEAEdavTHLPRCAHLFHINCIEPW-----LLRGHLTCPLCR 105
           ********44444478777*************.....89*********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MISMLFPRSP LCTAAIVFYT CVCIPLGRLK KNGGDADAHD DDGYNLVGVM FGDKEKEEEI 60
CCPICLVEFE AEDAVTHLPR CAHLFHINCI EPWLLRGHLT CPLCRSFVLA PTPPTQNVNN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTAGTCTAT AAAAGAGAGG GAAGGAATGA GGTAAAGAAG CAGAAAGCTG GAGAAAGATG 60
ATTTCAATGT TGTTTCCGCG GTCGCCTTTG TGCACAGCAG CCATAGTATT CTACACATGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0732--Signal
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0031225--C:anchored component of membrane
GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT4G38140

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006032	Arabidopsis lyrata	94.44	1.00e-55	207.00
IUUC-Bol-016104	Brassica oleracea	68.70	2.00e-46	179.00
IUUC-Bra-017196	Brassica rapa	70.73	3.00e-41	162.00
IUUC-Gma-042649	Glycine max	39.53	1.00e-20	91.30
IUUC-Mvi-060247	Microbotryum violaceum	55.10	2.00e-10	60.50
IUUC-Pop-099029	Populus trichocarpa	36.89	9.00e-20	88.20
IUUC-Ppe-101276	Prunus persica	30.77	1.00e-18	84.70
IUUC-Pgr-103545	Puccinia graminis	48.15	8.00e-11	60.10
IUUC-Stu-112159	Solanum tuberosum	37.50	4.00e-17	79.70

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence