iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-006069

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

GL348718

Gene Name

RMA1; ARALYDRAFT_911843

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_603900.1	scaffold_603900.1	scaffold_603900.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.30e-06	29.1	42	105
E3 activity/RING/RING	2.20e-09	38.4	45	94

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwl.....asggk........tcPvtrqplteedlvPn 58
            f C I l+  ++Pvv+ +G+ +   +I+kwl     +   +        +cPv+++++++++lvP 
   Q: 42   NFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLdvqsfS---TsdeyqrhrQCPVCKSKVSHSTLVPL 105
           79******************************764440...255667789***************96 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkw.....pglknssskefrCPlCr 46
           C iCl++ ++ p+v+ CgH+f+  C++kw     +  +++ +++ +CP+C+
   Q: 45   CNICLDSVQE-PVVTLCGHLFCWPCIHKWldvqsFSTSDEYQRHRQCPVCK 94
           99******99.999*****************99988889999999*****7 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MALDQSLEDA SVLYGEGAFC FKSKKPEPIS VSVSSDDGDD SNFDCNICLD SVQEPVVTLC 60
GHLFCWPCIH KWLDVQSFST SDEYQRHRQC PVCKSKVSHS TLVPLYGRGR CTTQEEGKNI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTTTTCAG GATTTTGACC AATGGCCTTA GATCAATCTC TTGAAGATGC TTCTGTACTC 60
TATGGAGAAG GTGCATTTTG TTTCAAGAGC AAGAAACCTG AACCCATCTC TGTCTCGGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005783--C:endoplasmic reticulum
GO:0016021--C:integral component of membrane
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0032527--P:protein exit from endoplasmic reticulum
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

aly:ARALYDRAFT_911843

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-006807	Arabidopsis thaliana	94.02	5.00e-123	432.00
IUUC-Bol-015157	Brassica oleracea	73.82	1.00e-86	311.00
IUUC-Bra-017909	Brassica rapa	74.58	4.00e-90	323.00
IUUC-Gma-043657	Glycine max	46.94	2.00e-45	175.00
IUUC-Mtr-058147	Medicago truncatula	43.70	1.00e-44	172.00
IUUC-Mvi-060316	Microbotryum violaceum	52.38	2.00e-14	72.00
IUUC-Pop-099799	Populus trichocarpa	46.57	2.00e-45	174.00
IUUC-Ppe-101414	Prunus persica	44.71	2.00e-44	171.00
IUUC-Pgr-103282	Puccinia graminis	37.70	6.00e-07	46.60
IUUC-Sly-111236	Solanum lycopersicum	43.59	5.00e-37	146.00
IUUC-Stu-112674	Solanum tuberosum	44.10	1.00e-34	139.00
IUUC-Sbi-114178	Sorghum bicolor	34.47	6.00e-27	113.00
IUUC-Tca-121702	Theobroma cacao	47.58	3.00e-57	214.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence