iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.10e-06	29.9	110	152

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlp....CgHvfhadClqkwpglknssskefrCPlCr 46
           CaiCl +f+   +vl+    C Hvfh++C+  w         + +CP+Cr
   Q: 110  CAICLLEFDG-DHVLRllttCYHVFHQECIDLW------FESHRTCPVCR 152
           ******9944.455444456*************......9999******8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSTIIPSPLA PQPPQQHYVT PPLTVILTVI LLVFFFIGFF TLYFCKCFLD TMVQAWRLHH 60
GGDTVSDNPL QQPEAPPVNP GLELRIINSF PTFPYSSVKD LREEKYGLEC AICLLEFDGD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCGACAA TAATTCCTTC ACCTCTGGCA CCGCAACCTC CGCAACAACA TTACGTTACA 60
CCGCCTCTCA CGGTGATCCT CACCGTAATC CTCCTCGTTT TCTTCTTCAT CGGTTTCTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT4G17920

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002545	Amborella trichopoda	39.75	6.00e-34	137.00
IUUC-Aly-005577	Arabidopsis lyrata	95.95	2.00e-139	487.00
IUUC-Bol-015459	Brassica oleracea	80.00	5.00e-113	399.00
IUUC-Bra-018021	Brassica rapa	78.16	4.00e-109	388.00
IUUC-Gma-044335	Glycine max	43.62	5.00e-46	177.00
IUUC-Mtr-058535	Medicago truncatula	42.59	5.00e-48	183.00
IUUC-Pop-099444	Populus trichocarpa	44.64	6.00e-48	183.00
IUUC-Ppe-101206	Prunus persica	46.30	4.00e-56	211.00
IUUC-Sly-111357	Solanum lycopersicum	44.80	3.00e-47	181.00
IUUC-Stu-112179	Solanum tuberosum	51.26	1.00e-32	133.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence