iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	1.70e-17	64.2	90	174

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 3    rvkvsykgeirsfaldlekpgkfedLlkavrt.lt..........elknsevalkYeDedGDlvtlksDedldkavsllaskksllrlliqk 83
            vkvs++g+++++++dl  + ++ +L+k ++  ++          ++k+s++ ++YeD+dGD++ l++D++++++vs      s++rl+i+k
   Q: 90   YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENmFKfsvgeyfereGYKGSDFVPTYEDKDGDWM-LVGDVPWEMFVS------SCKRLRIMK 174
           69******************************6448899999999*******************.************......********8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Protein Sequence
(Fasta)

MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK 60
AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY LRKIDLTMYK QYPELMKSLE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGTTGAAGA TGAAAGTGTC CCACAAATGT CCCCAAAATG ATGGGACACA CTTTGCCTCA 60
AAGTTGCTGC TACTGTTTAC TACCCGACAG CTTTAGCTTT TGCCTTTGTC CTTAAATCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0043565--F:sequence-specific DNA binding
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0044212--F:transcription regulatory region DNA binding
GO:0009734--P:auxin-activated signaling pathway
GO:0009733--P:response to auxin
GO:0006351--P:transcription, DNA-templated

KEGG

ath:AT5G43700

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002618	Amborella trichopoda	57.87	2.00e-56	210.00
IUUC-Aly-006269	Arabidopsis lyrata	95.65	1.00e-101	360.00
IUUC-Bci-013911	Botrytis cinerea	28.57	6.90e-01	27.30
IUUC-Bol-015312	Brassica oleracea	85.34	3.00e-90	323.00
IUUC-Bra-018063	Brassica rapa	85.34	5.00e-90	322.00
IUUC-Gma-043277	Glycine max	66.16	1.00e-67	248.00
IUUC-Lpe-051475	Leersia perrieri	45.18	5.00e-36	143.00
IUUC-Mtr-058557	Medicago truncatula	62.43	2.00e-60	224.00
IUUC-Pma-094652	Petromyzon marinus	46.15	1.40e+00	26.60
IUUC-Pop-098896	Populus trichocarpa	61.86	3.00e-65	240.00
IUUC-Ptt-103794	Puccinia triticina	41.67	7.40e-01	28.90
IUUC-Sly-110939	Solanum lycopersicum	68.28	1.00e-65	241.00
IUUC-Tca-121122	Theobroma cacao	69.27	9.00e-72	261.00
IUUC-Vvi-131257	Vitis vinifera	66.67	3.00e-64	236.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence