iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-018063

Ensembl Protein ID

Bra027504.1-P

UniProt Accession

M4EFE2; M4EFE2_BRARP

Protein Name

Auxin-responsive protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra027504	Bra027504.1	Bra027504.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	6.80e-18	65.7	95	180

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 2    vrvkvsykgeirsfaldlekpgkfedLlkavrt.lt..........elknsevalkYeDedGDlvtlksDedldkavsllaskksllrlliqk 83
           + vkvs++g+++++++dl ++ ++ +L+k ++  ++          ++k+se+ ++YeD+dGD++ l++D++++++vs      s++rl+i+k
   Q: 95   MYVKVSMDGAPYLRKIDLTVYKQYPELMKSLENmFKfsvgeycereRYKGSEFVPTYEDKDGDWM-LVGDVPWEMFVS------SCKRLRIMK 180
           579******************************6447899999999*******************.************......********8 PP

Organism

Brassica rapa

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Protein Sequence
(Fasta)

MENVGVCDEF VNLKATELRL GLPGTEDGGE EERQKVSCCK SNKRAFPETE KDIESTGKTK 60
PASPPKAQIV GWPPVRSYRK NNIQTKKNES EGQGMYVKVS MDGAPYLRKI DLTVYKQYPE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAAAACG TTGGAGTTTG TGATGAGTTT GTTAACCTAA AGGCAACAGA GCTGAGACTA 60
GGATTACCAG GAACAGAAGA TGGAGGTGAA GAGGAGAGAC AAAAGGTTTC TTGCTGTAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0043565--F:sequence-specific DNA binding
GO:0044212--F:transcription regulatory region DNA binding
GO:0009734--P:auxin-activated signaling pathway
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002618	Amborella trichopoda	55.94	3.00e-55	207.00
IUUC-Aly-006269	Arabidopsis lyrata	84.90	3.00e-89	320.00
IUUC-Ath-007238	Arabidopsis thaliana	85.34	6.00e-90	322.00
IUUC-Bol-015312	Brassica oleracea	96.86	6.00e-107	379.00
IUUC-Gma-042959	Glycine max	63.59	1.00e-67	248.00
IUUC-Mtr-058771	Medicago truncatula	62.62	9.00e-65	239.00
IUUC-Mac-064820	Musa acuminata	57.22	6.00e-55	206.00
IUUC-Pma-094652	Petromyzon marinus	46.15	2.50e+00	26.20
IUUC-Pop-098896	Populus trichocarpa	64.92	5.00e-66	243.00
IUUC-Ppe-101322	Prunus persica	66.31	2.00e-69	254.00
IUUC-Sit-109772	Setaria italica	52.97	8.00e-44	170.00
IUUC-Sly-110939	Solanum lycopersicum	70.37	5.00e-67	246.00
IUUC-Stu-112670	Solanum tuberosum	70.00	7.00e-67	246.00
IUUC-Tni-120011	Tetraodon nigroviridis	34.69	1.40e+00	27.30
IUUC-Tca-121122	Theobroma cacao	65.64	1.00e-71	261.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence