iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007017

UUCD1 version

UUC-ArT-01574

Ensembl Protein ID

AT3G11840.1

UniProt Accession

Q9SF15; B9DGA6; F4J7H3; PUB24_ARATH

Genbank Protein ID

AAF23200.1; AEE75107.1; BAF00844.1; BAH19773.1; AAM67265.1

Protein Name

E3 ubiquitin-protein ligase PUB24; Plant U-box protein 24; RING-type E3 ubiquitin transferase PUB24; U-box domain-containing protein 24

Genbank Nucleotide ID

AC016795; CP002686; AK228955; AK317081; AY084238

Gene Name

PUB24; At3g11840; F26K24.13

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G11840	AT3G11840.1	AT3G11840.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.30e-31	107.7	9	81

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqpl.teedlvPnltlrrliqawceens 73
           e+p +f+CpIsle+M+dPv++ sGitydr++I kwl++  + cPvt+qpl  ++dl+Pn+ lrrliq+wc en+
   Q: 9    EIPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWLEKVPS-CPVTKQPLpLDSDLTPNHMLRRLIQHWCVENE 81
           69**************************************9.********889999***************997 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

E3 ubiquitin-protein ligase that acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB22 and PUB23.

Protein Sequence
(Fasta)

MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD 60
SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV VEEIKNLKKF GQEALGREET 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATCAAG AAGAGGAAGA GATCGAGATT CCTAATTACT TTATCTGCCC AATCTCACTA 60
GAGATCATGA AAGATCCAGT CACGACCGTT TCTGGCATCA CTTACGACCG TCAAAACATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0611--Plant defense
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0006952--P:defense response

KEGG

ath:AT3G11840

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006382	Arabidopsis lyrata	92.45	0.00e+00	806.00
IUUC-Bol-016395	Brassica oleracea	80.70	0.00e+00	710.00
IUUC-Bra-017316	Brassica rapa	79.33	0.00e+00	663.00
IUUC-Mtr-057873	Medicago truncatula	42.12	4.00e-97	347.00
IUUC-Pop-099498	Populus trichocarpa	45.79	6.00e-103	366.00
IUUC-Ppe-101540	Prunus persica	42.79	2.00e-102	365.00
IUUC-Stu-111998	Solanum tuberosum	40.75	1.00e-86	312.00
IUUC-Tca-121295	Theobroma cacao	46.88	5.00e-108	383.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence