iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007641

Ensembl Protein ID

AT5G27030.2

UniProt Accession

Q84JM4; Q9S9U5; TPR3_ARATH

Genbank Protein ID

AAD48936.1; AED93642.1; AAO42071.1; AAO50698.1

Protein Name

Topless-related protein 3

Genbank Nucleotide ID

AF160760; CP002688; BT004037; BT005165

Gene Name

TPR3; At5g27030; F15P11.3; F2P16.14

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G27030	AT5G27030.2	AT5G27030.2
AT5G27030	AT5G27030.1	AT5G27030.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-22	79.7	477	509

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDl 30
           H + v++laf  ++  l +++++dD+ ikvWD+
   Q: 477  HVGAVNDLAFanPNrQLcVITCGDDKLIKVWDV 509
           999********8764334799***********7 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Transcriptional corepressor. Negative regulator of jasmonate responses (By similarity).

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLEEEK FKESVHRLEK ESGFFFNTKY FDEKVLAGEW DDVETYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDRQEK AKAVEILVQD LRVFSTFNEE LYKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCTCTAAAA GCTAGAGCTC TTCAAAACCC TAGAAATCCT CGAAATCAGA GTCTTTACCT 60
GGGCTCGTGT CTTCAGAGCT CGGATTCGTG TTTCTTTCGT CGTCTCTCTT CTTCGTTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-1184--Jasmonic acid signaling pathway
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

KEGG

ath:AT5G27030

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bol-016367	Brassica oleracea	85.94	0.00e+00	1978.00
IUUC-Bra-017100	Brassica rapa	84.12	0.00e+00	1942.00
IUUC-Gma-042940	Glycine max	73.29	0.00e+00	1709.00
IUUC-Mtr-058168	Medicago truncatula	74.29	0.00e+00	1731.00
IUUC-Pop-099268	Populus trichocarpa	75.61	0.00e+00	1680.00
IUUC-Ppe-102061	Prunus persica	74.70	0.00e+00	1717.00
IUUC-Sly-111169	Solanum lycopersicum	72.54	0.00e+00	1679.00
IUUC-Stu-112369	Solanum tuberosum	72.28	0.00e+00	1677.00
IUUC-Tca-121768	Theobroma cacao	75.56	0.00e+00	1727.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence