iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121768

Ensembl Protein ID

EOY11566

UniProt Accession

A0A061F3E3; A0A061F3E3_THECC

Genbank Protein ID

EOY11566.1

Protein Name

TOPLESS-related 3 isoform 1

Genbank Nucleotide ID

CM001883

Gene Name

TCM_026702

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_026702	EOY11566	EOY11566
TCM_026702	EOY11567	EOY11567
TCM_026702	EOY11568	EOY11568

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-24	86.1	916	948
UBD/Beta-Prp	1.30e-42	147.0	405	658

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           gH+ ++t+laf ++ ++lvs++ D  + vW+++
   Q: 916  GHQKRITGLAFsTSlNILVSSGADAHLCVWSID 948
           8**********8779***************975 PP

UBD/Beta-Prp

   S: 6    kghhksvitcvkfspdksllatgsrdgtikvwdvttgk.llrsl..sgheaevtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlkghedsvlsls 101
           +++ +sv + v++spd+s++ +++  + i ++ +  ++ l+ +l    h ++v+++ f +  k   +vt+++D++ikvwd  tg+ v  ++gh++ v+s+ 
   Q: 405  NDATISVSR-VTWSPDGSFVGVAFSKHLIHLYAYPGPNdLIPRLeiDAHVGGVNDLAFAHPNKqlCIVTCGDDKLIKVWDSMTGQKVFNFEGHDAPVYSIC 504
           555666666.999********************987651677776689**********99888899*********************************98 PP
   S: 102  fsp..sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDr....tvrlWdlktgkllrtltgghtdsvyslsfdsngkelv 196
            +   + +++ s+  d  i+ w  ++     + +++  ++ +++ ++ dg+ l+s+++ +    ++  W+ + g + rt  g  ++s   +sfd ++++++
   Q: 505  PHHkeNIQFIFSTAVDGKIKAWLYDNMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKdgesFLVEWNESEGAIKRTYVGFRKKSAGVVSFDTTQNHFL 604
           8776666***************99887777756555.55999999999999999997654112244457779999*****999****************** PP
   S: 197  sgsldgtvklwdlqtgecvrtlnght...dnvksvrfspnderlvsgssDgsiri 248
           ++++d+++k+wd+ + + + t+++ +       +vrf +++++l+++++D+  +i
   Q: 605  AAGEDSQIKFWDMDNIN-LLTFTDAEgglPSLPRVRFNKEGNLLAVTTADNGFKI 658
           *************9887.55555555333556679999999*9999999998776 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLEEEK FKESVHKLEK ESGFFFNMKY FEEKVQAGEW EEVEKYLAGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDRQDK AKAVEILVSD LKVFSTFNEE LYKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGAAAATAG AGGGGGAAAA CATCAGTCAA ACCACGAAAT ATCGCGACAA AATTAGCGAC 60
TCGGAAAAAT TCGGTCCTTG TGGAAAAACT CGTGTAATGA GGAAAGCGAC ACTACGAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR003143--Cyt_cd1_C
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007641	Arabidopsis thaliana	75.56	0.00e+00	1716.00
IUUC-Bol-016367	Brassica oleracea	75.75	0.00e+00	1729.00
IUUC-Bra-017100	Brassica rapa	74.14	0.00e+00	1692.00
IUUC-Gma-042940	Glycine max	83.32	0.00e+00	1920.00
IUUC-Hvu-047370	Hordeum vulgare	71.10	0.00e+00	1637.00
IUUC-Lpe-050951	Leersia perrieri	70.48	0.00e+00	1581.00
IUUC-Mtr-058168	Medicago truncatula	83.57	0.00e+00	1922.00
IUUC-Mac-064660	Musa acuminata	70.15	0.00e+00	1589.00
IUUC-Pop-099268	Populus trichocarpa	85.25	0.00e+00	1879.00
IUUC-Ppe-102061	Prunus persica	83.32	0.00e+00	1884.00
IUUC-Sly-111169	Solanum lycopersicum	79.07	0.00e+00	1450.00
IUUC-Stu-112369	Solanum tuberosum	78.72	0.00e+00	1447.00
IUUC-Tae-125707	Triticum aestivum	70.15	0.00e+00	1638.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence