iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bol-016225

Ensembl Protein ID

Bo6g080420.1

UniProt Accession

A0A0D3CVM6; A0A0D3CVM6_BRAOL

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bo6g080420	Bo6g080420.1	Bo6g080420.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.40e-22	77.7	461	499
UBD/Beta-Prp	3.20e-45	156.1	394	628

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtgvll 36
           H ++v+++af  ++  l + +++dD+tikvWD  tgv+ 
   Q: 461  HVGGVNDIAFstPNkQLcFTTCGDDKTIKVWDAATGVKR 499
           99********98664444788***********9999875 PP

UBD/Beta-Prp

   S: 74   rtikvwdlstgkcvhtlkghedsvls...lsfspsgdklvsGshdrtirvwdletgqclee...tlsghdgvvncvvvhpdg.nllvsGslDrtvrl 163
           +t kvwdls++++       ++ v+s   + +sp+g+ + ++ +  +++++  + g+ +++   +++   gv+ ++ + p++  ++ ++++D+t+++
   Q: 394  KTFKVWDLSKCSMPLQAALVKEPVVSvnrVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQhleIDAHVGGVNDIAFSTPNKqLCFTTCGDDKTIKV 490
           5889*****999988888888888885557799*******************999999999887777777777777778888677889********* PP
   S: 164  Wdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgs..sDgsiri..Wdlrsg 254
           Wd +tg   +t++g h+ +vys+   +++n +++ s +ldg++k w + +    + +++  ++ + ++ s +++rl s++  +Dg  +i  W+   g
   Q: 491  WDAATGVKRHTFEG-HEAPVYSICphYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGtsKDGDSYIveWNESEG 586
           *************9.********98899999******************9999*************************9888777766667****** PP
   S: 255  dllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkk 296
            + +t+q+ ++++  v  ++ ++n ++++++d ++++w++++
   Q: 587  AVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDN 628
           **********999888888********************987 PP

Organism

Brassica oleracea

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFSMKY FEDEVHSGNW DEVEKYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVEILVKD LRVFSTFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTTCTC TCAGTAGGGA GCTCGTGTTC TTGATCTTAC AGTTTCTAGA TGAAGAGAAG 60
TTCAAAGAGA CTGTTCATAA GTAAGTTTTT TTTTTTTATC TGGGGTTTGT GAAGAATCAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR027295--Quinoprotein_ADH-like_fam
IPR027728--Topless_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0010072--P:primary shoot apical meristem specification
GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002737	Amborella trichopoda	76.81	0.00e+00	1734.00
IUUC-Aly-005472	Arabidopsis lyrata	96.10	0.00e+00	2120.00
IUUC-Ath-007640	Arabidopsis thaliana	95.20	0.00e+00	2128.00
IUUC-Bra-017496	Brassica rapa	99.54	0.00e+00	2201.00
IUUC-Lpe-051514	Leersia perrieri	74.19	0.00e+00	1661.00
IUUC-Mtr-058037	Medicago truncatula	82.72	0.00e+00	1874.00
IUUC-Oba-075912	Oryza barthii	76.99	0.00e+00	1743.00
IUUC-Oni-082412	Oryza nivara	76.99	0.00e+00	1743.00
IUUC-Opu-083406	Oryza punctata	75.07	0.00e+00	1691.00
IUUC-Oru-084328	Oryza rufipogon	76.72	0.00e+00	1747.00
IUUC-Pop-098876	Populus trichocarpa	81.79	0.00e+00	1875.00
IUUC-Ppe-101370	Prunus persica	83.71	0.00e+00	1944.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence