iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121740

Ensembl Protein ID

EOY28210

UniProt Accession

A0A061GED6; A0A061GED6_THECC

Genbank Protein ID

EOY28210.1

Protein Name

LisH dimerization motif,WD40/YVTN repeat-like-containing domain isoform 1

Genbank Nucleotide ID

CM001884

Gene Name

TCM_029842

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_029842	EOY28210	EOY28210
TCM_029842	EOY28211	EOY28211

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.90e-28	96.3	408	440

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           gH+  +t ++f ++ t+++++s D+t+k+WD +
   Q: 408  GHSLLITEVRFrPSsTIFATSSFDKTVKIWDST 440
           78999*******666****************65 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MASSDGWDAE KMLDLYLHDY LMKKNMHETA TAFRKEAGIS NHSVVIDSPQ GLLQEWWSVF 60
YDIFASRLPK HQEYSEAETS ANKAEILENQ SLNLRSILTP SMISQQRPGP VLIPRDFDSS 120

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Nucleotide Sequence
(Fasta)

AATGACTTAT TCACAGCCAT TGGATGTCTT CTGCTTTTTT GTGCGGATCA TGTTACTATA 60
TACATATATC TTGCAAAAGA GTTAAAAAGG CCATGCTTTT GTGTTCTATT CCTTGGCGAA 120

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Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

SMART

SM00667--LisH
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Gma-043849	Glycine max	47.95	8.00e-165	573.00
IUUC-Mtr-058662	Medicago truncatula	56.08	4.00e-127	447.00
IUUC-Pop-099223	Populus trichocarpa	63.64	1.00e-143	501.00
IUUC-Ppe-101471	Prunus persica	67.84	1.00e-132	465.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence