iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.1__1204__AT1G11160.1	fgenesh2_kg.1__1204__AT1G11160.1	fgenesh2_kg.1__1204__AT1G11160.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.50e-38	129.8	140	178
UBD/Beta-Prp	6.80e-54	183.7	13	251

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt++++ ++f +d + +vsG+ D+++kvWDl+ g+ll+
   Q: 140  GHTCGISTIRFsPDgRWVVSGGLDNVVKVWDLTAGKLLH 178
           8***********99999******************9987 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlst 83
           +h++ ++c+ + ++ ++ll+tg++d ++ +w++ + + l sl gh+++v +v f++ + + + g++ ++ik+wdl+ 
   Q: 13   AHSGNVNCLSIgKKTSRLLLTGGDDYKVNLWSIGKTTSLMSLCGHTSPVDSVAFNSGEILVLGGASSGVIKLWDLEE 89
           7888899999999********************************************9555566677********** PP
   S: 84   gkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrt 160
            k+v++++gh ++  +++f+p g++l+sGs+d  +rvwd++++ c++ t +gh+  +++++++pdg+ +vsG+lD++
   Q: 90   AKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQ-TYKGHTCGISTIRFSPDGRWVVSGGLDNV 165
           ***********************************************.***************************** PP
   S: 161  vrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderl 237
           v++Wdl  gkll++++  h+++++sl+f++  + l++gs d+tvk+wdl+t e + + +   + v+ ++f+p+++ l
   Q: 166  VKVWDLTAGKLLHEFKF-HEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEAAGVRAIAFHPDGQTL 241
           ****************9.*********************************************************** PP
   S: 238  vsgssDgsiri 248
            +g +Dg +++
   Q: 242  FCGLDDG-LKV 251
           **98666.444 PP

Organism

Arabidopsis lyrata

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MAKRGYKLQE FVAHSGNVNC LSIGKKTSRL LLTGGDDYKV NLWSIGKTTS LMSLCGHTSP 60
VDSVAFNSGE ILVLGGASSG VIKLWDLEEA KMVRAFTGHR SNCSAVEFHP FGEFLASGSS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAATCTCT TCTTTTCTTT TTCTCGTTCC CTTCTAAGTT CTTCTTTAAA TCTTTAATCT 60
CAGCAGGAAG CAATCTCTCT TGTCTCAAGT TTCTATTTTC TTAATCTCCG AGAAATCTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

aly:ARALYDRAFT_471250

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-006686	Arabidopsis thaliana	92.31	0.00e+00	1873.00
IUUC-Bol-016453	Brassica oleracea	72.67	0.00e+00	1386.00
IUUC-Bra-017265	Brassica rapa	57.12	0.00e+00	1161.00
IUUC-Gma-043323	Glycine max	62.02	0.00e+00	635.00
IUUC-Mtr-057706	Medicago truncatula	58.80	1.00e-173	603.00
IUUC-Mac-065245	Musa acuminata	63.89	1.00e-143	503.00
IUUC-Pop-100006	Populus trichocarpa	64.02	0.00e+00	684.00
IUUC-Ppe-101697	Prunus persica	59.27	1.00e-175	609.00
IUUC-Sly-111901	Solanum lycopersicum	42.47	0.00e+00	727.00
IUUC-Sbi-114389	Sorghum bicolor	69.54	5.00e-136	478.00
IUUC-Tca-121590	Theobroma cacao	58.45	0.00e+00	696.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence