iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d053450	Zm00001d053450_T031	Zm00001d053450_T031
Zm00001d053450	Zm00001d053450_T001	Zm00001d053450_T001
Zm00001d053450	Zm00001d053450_T032	Zm00001d053450_T032
Zm00001d053450	Zm00001d053450_T050	Zm00001d053450_T050
Zm00001d053450	Zm00001d053450_T017	Zm00001d053450_T017
Zm00001d053450	Zm00001d053450_T025	Zm00001d053450_T025
Zm00001d053450	Zm00001d053450_T046	Zm00001d053450_T046
Zm00001d053450	Zm00001d053450_T076	Zm00001d053450_T076
Zm00001d053450	Zm00001d053450_T011	Zm00001d053450_T011
Zm00001d053450	Zm00001d053450_T033	Zm00001d053450_T033
Zm00001d053450	Zm00001d053450_T016	Zm00001d053450_T016
Zm00001d053450	Zm00001d053450_T086	Zm00001d053450_T086
Zm00001d053450	Zm00001d053450_T037	Zm00001d053450_T037
Zm00001d053450	Zm00001d053450_T035	Zm00001d053450_T035
Zm00001d053450	Zm00001d053450_T006	Zm00001d053450_T006
Zm00001d053450	Zm00001d053450_T079	Zm00001d053450_T079
Zm00001d053450	Zm00001d053450_T073	Zm00001d053450_T073
Zm00001d053450	Zm00001d053450_T021	Zm00001d053450_T021
Zm00001d053450	Zm00001d053450_T067	Zm00001d053450_T067
Zm00001d053450	Zm00001d053450_T088	Zm00001d053450_T088
Zm00001d053450	Zm00001d053450_T060	Zm00001d053450_T060
Zm00001d053450	Zm00001d053450_T040	Zm00001d053450_T040

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	4.10e-77	261.7	438	742

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 2    GlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefsgyeqq 90
           Gl N gN+CY N+vLQcL+ +++l+ +ll   +++++     +++k +l+++l++  + l  ++ +  sp+++l+ l+++  ++ g  q+
   Q: 438  GLFNCGNSCYANAVLQCLMCTKPLMIYLLLrLHSKDC-----SSKKWCLMCELEQYASTL-RESGGPLSPSRILSNLRNIGCRLGGGTQE 521
           9*************************99983444444.....56789**********999.9999************************* PP
   S: 91   DaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgke 180
           Da+Efl++l+ +++ ++                  l  e+  ++  ++++li+++F+g+lks++kcl+c ++s+r+e+ +dl+l+++g  
   Q: 522  DAHEFLRHLVMSMQAAC---------------LDGLGGEKHVEPSLQETTLIQQMFGGRLKSKVKCLRCYHESERYENIMDLTLEIHGWV 596
           *****************...............235666688999********************************************99 PP
   S: 181  etkkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfctspee 270
           e    slqd+L +ft++e l+g+n+y+c +c ++++a+k+l+++++P++L++ LkRf    + ++  kink+v+fp++Ld+ pf+t + +
   Q: 597  E----SLQDALTQFTAPEDLDGDNMYKCGSCAAYVKARKQLSVHEVPNILTVVLKRF----QSGKYGKINKCVTFPDMLDMVPFVTGSGD 678
           7....8***************************************************....346678********************665 PP
   S: 271  kqkekkkYeLiavvvHsG...slssGHYvayvknekgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
           +   +  Y L+avvvH      + sGHY++yvk+ +g Wl++dDs+V++v+ ++v +   + aY+lfY+r
   Q: 679  N---PPLYFLYAVVVHVDtenASFSGHYISYVKDMQGTWLRIDDSEVQVVSVNQVMS---EGAYMLFYMR 742
           5...9***********885423559********************************...********98 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MLQPREADLP ALFLVFIVLP VVAYFLLGRW HDAASKKARV SVLAQRAAEE AYREETMACP 60
DIILPGSSLR TMPYFRPMPA LRQEYHECAT CHAPAKTRCS RCKAVRYCSG KCQIVHWRQG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAGCGCAGA GACGGCAGAG AGCACAGTAG CCAAGCGACT GGAGACTCAT CACTGGAGAC 60
TGGAGAGCAT CCGGAGCCAG TGCTCGCACC ACCGCTCCCG ATTCCCAATC GCCTTCCCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR002893--Znf_MYND

PROSITE

PS00972--USP_1
PS50235--USP_3
PS50865--ZF_MYND_2

Pfam

PF00443--UCH
PF01753--zf-MYND

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

zma:103654750

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000426	Aegilops tauschii	75.25	0.00e+00	1021.00
IUUC-Atr-003062	Amborella trichopoda	54.44	9.00e-158	550.00
IUUC-Aly-006034	Arabidopsis lyrata	58.17	3.00e-165	575.00
IUUC-Ath-007599	Arabidopsis thaliana	54.58	5.00e-167	581.00
IUUC-Bol-015616	Brassica oleracea	41.14	2.00e-175	609.00
IUUC-Bra-017955	Brassica rapa	42.92	0.00e+00	650.00
IUUC-Gma-043603	Glycine max	61.46	0.00e+00	631.00
IUUC-Hvu-047393	Hordeum vulgare	72.12	0.00e+00	758.00
IUUC-Mtr-058164	Medicago truncatula	47.14	0.00e+00	699.00
IUUC-Mac-064719	Musa acuminata	50.21	0.00e+00	792.00
IUUC-Opu-083669	Oryza punctata	71.60	0.00e+00	1249.00
IUUC-Olu-087767	Ostreococcus lucimarinus	36.10	3.00e-55	207.00
IUUC-Pop-099882	Populus trichocarpa	59.65	6.00e-178	617.00
IUUC-Ppe-101942	Prunus persica	48.41	0.00e+00	719.00
IUUC-Sly-111027	Solanum lycopersicum	57.30	6.00e-179	620.00
IUUC-Tca-121618	Theobroma cacao	59.01	0.00e+00	660.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence