iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007569

UUCD1 version

UUC-ArT-01221

Ensembl Protein ID

AT1G76390.2

UniProt Accession

Q9SFX2; PUB43_ARATH

Genbank Protein ID

AAF16662.1; AEE35833.1; AEE35834.1; AT1G76390.1

Protein Name

U-box domain-containing protein 43; Plant U-box protein 43; RING-type E3 ubiquitin transferase PUB43

Genbank Nucleotide ID

AC012394; CP002684; CP002684; AK226857

Gene Name

PUB43; At1g76390; F15M4.11

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G76390	AT1G76390.2	AT1G76390.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	5.40e-26	91.4	25	101

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggk.....tcPvtrqplteedlvPnltlrrliqawceens 73
           ++e+f+Cp+++++M++Pv+l++G+t++r++Iekw++++++     +cP+t+++l+ +dl P+++lr++i++w+++n+
   Q: 25   IYEAFICPLTKQVMHNPVTLENGQTFEREAIEKWFQECREngqplSCPITSKELSITDLSPSIALRNTIEEWRARND 101
           799********************************998888899******************************997 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MAGSGSWDGS QSDNSSQFEP GIDNIYEAFI CPLTKQVMHN PVTLENGQTF EREAIEKWFQ 60
ECRENGQPLS CPITSKELSI TDLSPSIALR NTIEEWRARN DALKLDIARQ SLYLGNAETN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTAAAATGA CACAAAAAAC GTTTTATTTT GGGTAGTCTC GGTGTTCACA TGTGTTTTCC 60
CATGACGACT TCTCAATAAT TGTCAAAGCT TTTTGGTATA TGTCTATTTT CTATTTTTTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005886--C:plasma membrane
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

ath:AT1G76390

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000143	Aegilops tauschii	58.59	0.00e+00	859.00
IUUC-Atr-002916	Amborella trichopoda	57.76	0.00e+00	861.00
IUUC-Aly-005480	Arabidopsis lyrata	96.30	0.00e+00	1494.00
IUUC-Bdi-014487	Brachypodium distachyon	57.13	0.00e+00	849.00
IUUC-Bra-017841	Brassica rapa	85.70	0.00e+00	1317.00
IUUC-Gma-044318	Glycine max	65.48	0.00e+00	1031.00
IUUC-Hvu-047783	Hordeum vulgare	58.84	0.00e+00	870.00
IUUC-Lpe-050971	Leersia perrieri	58.86	0.00e+00	822.00
IUUC-Mtr-058511	Medicago truncatula	65.48	0.00e+00	1009.00
IUUC-Mac-064911	Musa acuminata	55.21	0.00e+00	816.00
IUUC-Obr-076103	Oryza brachyantha	58.74	0.00e+00	821.00
IUUC-Ppa-096021	Physcomitrella patens	45.47	0.00e+00	661.00
IUUC-Pop-099966	Populus trichocarpa	67.61	0.00e+00	1028.00
IUUC-Ppe-101973	Prunus persica	64.89	0.00e+00	994.00
IUUC-Smo-109219	Selaginella moellendorffii	45.40	0.00e+00	635.00
IUUC-Sit-110490	Setaria italica	58.42	0.00e+00	847.00
IUUC-Stu-111962	Solanum tuberosum	65.64	0.00e+00	998.00
IUUC-Ssc-115521	Sus scrofa	28.57	2.00e-06	47.00
IUUC-Tca-121113	Theobroma cacao	67.69	0.00e+00	1077.00
IUUC-Tur-126573	Triticum urartu	58.34	0.00e+00	861.00
IUUC-Vvi-131623	Vitis vinifera	65.89	0.00e+00	1055.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence