iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007380

UUCD1 version

UUC-ArT-00832

Ensembl Protein ID

AT5G42350.1

UniProt Accession

Q9FII2; Q8VXV3; FK117_ARATH

Genbank Protein ID

BAB10476.1; AED94799.1; AAL67108.1; AAL32014.1; AAQ22650.1

Protein Name

F-box/kelch-repeat protein At5g42350

Genbank Nucleotide ID

AB016888; CP002688; AY074568; AF436832; BT010181

Gene Name

At5g42350; MDH9.4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G42350	AT5G42350.1	AT5G42350.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	Mentha
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box	F-box	23475998

Classification

Family	E-value	Score	Start	End
E3 adaptor/Cullin RING/SCF/F-box	0.00076	20.4	125	171

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/SCF/F-box

   S: 96   egpdaglldrlpeeilveilklldkeellraarvcrrwqelasqkal 142
            g d      lp++il  +l++l+ ++ll+a++vc++wq +a+++++
   Q: 125  SGQDYRKHVYLPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRF 171
           6788888999*****************************88775555 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MMISEKPLGV EESIRQDLEV LTVSRRLVKS VSQKLKKKIH KTEVVEDEEI ARGAVNCLSI 60
SVGCRVADTG EDFEDSSNKR WSSASEEGKG LMTICGTEET RLDCFSYGVR ERFWKKNNRK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCTGTCTCCT ACATGACTTA AAAATTAAAA TAAAACGAAA AGGGAAAGCG AAATTGTTCC 60
TTCCTTTTTA GCCTTTTAGG TCTTCGAATT CTCAATTTTC TTCGGTGATT TCTAAAATCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0880--Kelch repeat
KW-1185--Reference proteome
KW-0677--Repeat

Interpro

IPR001810--F-box_dom
IPR015916--Gal_Oxidase_b-propeller
IPR015915--Kelch-typ_b-propeller
IPR006652--Kelch_1

PROSITE

PS50181--FBOX

Pfam

PF00646--F-box
PF01344--Kelch_1

SMART

SM00256--FBOX
SM00612--Kelch

Gene Ontology

GO:0031463--C:Cul3-RING ubiquitin ligase complex
GO:0019005--C:SCF ubiquitin ligase complex
GO:0016567--P:protein ubiquitination
GO:0001558--P:regulation of cell growth
GO:0008361--P:regulation of cell size

KEGG

ath:AT5G42350

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000640	Aegilops tauschii	41.74	9.00e-64	236.00
IUUC-Atr-002933	Amborella trichopoda	42.33	9.00e-124	436.00
IUUC-Aly-005496	Arabidopsis lyrata	92.53	0.00e+00	1098.00
IUUC-Bdi-014028	Brachypodium distachyon	42.22	8.00e-90	323.00
IUUC-Bol-016009	Brassica oleracea	78.63	0.00e+00	835.00
IUUC-Bra-017933	Brassica rapa	78.75	0.00e+00	839.00
IUUC-Gma-043263	Glycine max	56.87	0.00e+00	643.00
IUUC-Lpe-051197	Leersia perrieri	39.65	2.00e-55	209.00
IUUC-Mtr-058516	Medicago truncatula	57.65	0.00e+00	658.00
IUUC-Oba-075003	Oryza barthii	45.00	4.00e-47	181.00
IUUC-Ogl-077287	Oryza glaberrima	41.20	2.00e-65	242.00
IUUC-Oin-079081	Oryza indica	48.11	2.00e-46	178.00
IUUC-Ome-082005	Oryza meridionalis	41.06	3.00e-72	265.00
IUUC-Opu-083845	Oryza punctata	42.20	3.00e-76	278.00
IUUC-Pop-098844	Populus trichocarpa	62.84	0.00e+00	718.00
IUUC-Ppe-101306	Prunus persica	62.78	0.00e+00	747.00
IUUC-Ptt-103897	Puccinia triticina	32.65	7.30e-02	31.60
IUUC-Sly-111848	Solanum lycopersicum	56.70	0.00e+00	674.00
IUUC-Stu-112855	Solanum tuberosum	56.70	0.00e+00	678.00
IUUC-Sbi-114836	Sorghum bicolor	42.70	9.00e-94	337.00
IUUC-Tca-121490	Theobroma cacao	63.23	0.00e+00	721.00
IUUC-Tur-126869	Triticum urartu	37.28	3.00e-52	198.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence