iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099663

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000354

Gene Name

POPTRDRAFT_578661; POPTR_0018s10720g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0018s10720	POPTR_0018s10720.1	POPTR_0018s10720.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	5.90e-07	31.0	102	144

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg.pl..vlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C +Cle++k+g ++  +++CgHvfh++C+ +w        k   CP+Cr
   Q: 102  CVVCLEEIKQGqWCrnLVGCGHVFHRKCVDAW------LVKVSACPICR 144
           9*******66653323578*************......**********8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MPPPHHHHDH HRTHGGAPPK PNQEFLSLIL KAIIMTAITI FFFLFLGVAA ILLLFATSAL 60
HRHSTTSSNS PKALPLKELK KLPRFRFSTK TRPETGADQS SCVVCLEEIK QGQWCRNLVG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCGTAAAAAC CGCACTTCTC TTTTCTTCTT TTCTCATACT CATCTATTGG ACCCAACTTT 60
TGCAGATACC AAAAACCTTT TCCTTTTCAT TCTTTCACAT CCATCTGTAA CCATGCCTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0018s10720g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002642	Amborella trichopoda	42.73	1.00e-17	81.60
IUUC-Aly-006401	Arabidopsis lyrata	43.75	2.00e-25	107.00
IUUC-Ath-007060	Arabidopsis thaliana	44.44	8.00e-26	109.00
IUUC-Bol-015094	Brassica oleracea	57.14	8.00e-22	95.90
IUUC-Bra-017657	Brassica rapa	61.64	3.00e-22	97.10
IUUC-Mtr-058539	Medicago truncatula	44.83	1.00e-20	92.00
IUUC-Olo-080678	Oryza longistaminata	43.55	4.00e-13	68.90
IUUC-Ppe-101566	Prunus persica	43.56	2.00e-23	101.00
IUUC-Sly-111550	Solanum lycopersicum	44.05	6.00e-16	76.30
IUUC-Stu-112197	Solanum tuberosum	51.56	5.00e-16	76.30
IUUC-Tca-121196	Theobroma cacao	57.61	1.00e-25	108.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence