iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007005

UUCD1 version

UUC-ArT-00700

Ensembl Protein ID

AT5G21040.2

UniProt Accession

Q94AD8; FBW3_ARATH

Genbank Protein ID

AED92922.1; AED92923.1; ANM69782.1; AAK82516.1; AAO11609.1

Protein Name

F-box/WD-40 repeat-containing protein At5g21040

Genbank Nucleotide ID

AF296834; CP002688; CP002688; AY048254; BT002693

Gene Name

At5g21040; T10F18.70

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G21040	AT5G21040.2	AT5G21040.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.10e-35	120.1	255	291
UBD/Beta-Prp	3.20e-47	162.0	209	470

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd.tllvsGsdDgtikvWDlrtgvllk 37
           gH++++t+la+ d t + sGs+D ++++WD ++ +++k
   Q: 255  GHEGPITSLAL-DmTSIFSGSWDMSVRIWDRSSMKCVK 291
           8**********.779***************88888876 PP

UBD/Beta-Prp

   S: 17   kfspdksllatgsrdgtikvwdvttgkl.............lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsls 101
           + + d++ll++g++dg i  w+  +g                 +l ghe+++t++ ++ +   + +gs D+ +++wd s+ kcv tl+ h+d v+ l+
   Q: 209  ALAADTKLLVAGGTDGFIHCWKSLDGLRnlfdltgfqkektEFRLWGHEGPITSLALDMT--SIFSGSWDMSVRIWDRSSMKCVKTLR-HSDWVWGLA 303
           336799*******************98899*********99999****************..59************************.********* PP
   S: 102  fspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl......ktgkllrtltgghtdsvyslsfdsngk 193
            ++   +l+s+s    + +wd+++++ l  + + h+g++ +++ + +g+ l++G+ D+ ++++ +       +  l+ ++   ht++vyslsf+   +
   Q: 304  PHE--TTLASTSGS-DVYIWDVSSETPLAIIPDAHEGTTYSLARSHTGDFLFTGGEDGGIKMFEIrrygseTSVVLISQWMP-HTSPVYSLSFEF--P 395
           ***..788888855.489***********************************************99999777889999998.***********9..9 PP
   S: 194  elvsgsldgtvklwdlq....tgec..............vrtlnghtdnvksvrfspnderlvsgssDgsiriWdlr 252
            lvs+s dg++ l d++    t++c               r l+g  +n  sv++    +r+v+g+++g++riW+ +
   Q: 396  WLVSASGDGKLALIDVRkllkTNRCayskrissstveppQRMLHGFGSNLFSVDVG--YDRIVCGGEEGTVRIWNFT 470
           9****************999988888888888888888899999999********9..****************975 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MEFECQERLE AANDQRSESG LLNTDLRIGN DGSVEIPNVK LCCQKKKGTL VPSGSKQLLS 60
DKDLSTTIID LPQALISEIL NCLDPKELGL VSCVSTYLHR LASEHHAWKE FYRERWGLPV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTAGCTGCTC ATATCGTACG ATCTGGACGC TTGATTTGTT TTTCGATCGG ACGGTTAGTA 60
TAGCACCGTC CGGGGACCAT AAAAAAAAAA CAAATTGGCA ATAATGTTTT TTTTTTTACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR001810--F-box_dom
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50181--FBOX
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00646--F-box
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00256--FBOX
SM00320--WD40

Gene Ontology

GO:0016036--P:cellular response to phosphate starvation

KEGG

ath:AT5G21040

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000413	Aegilops tauschii	55.97	5.00e-157	547.00
IUUC-Atr-002870	Amborella trichopoda	51.50	2.00e-137	481.00
IUUC-Aly-005424	Arabidopsis lyrata	93.58	0.00e+00	970.00
IUUC-Bdi-014622	Brachypodium distachyon	57.14	4.00e-160	557.00
IUUC-Bol-016449	Brassica oleracea	83.42	0.00e+00	873.00
IUUC-Bra-017684	Brassica rapa	89.20	3.00e-179	620.00
IUUC-Gma-044132	Glycine max	68.33	0.00e+00	629.00
IUUC-Hvu-047789	Hordeum vulgare	56.18	3.00e-159	554.00
IUUC-Lpe-051245	Leersia perrieri	54.79	4.00e-151	527.00
IUUC-Mtr-058000	Medicago truncatula	66.05	0.00e+00	634.00
IUUC-Mac-065354	Musa acuminata	58.63	2.00e-158	551.00
IUUC-Oba-074979	Oryza barthii	56.76	1.00e-158	552.00
IUUC-Obr-076615	Oryza brachyantha	56.70	7.00e-159	553.00
IUUC-Ogl-077075	Oryza glaberrima	56.76	7.00e-159	553.00
IUUC-Ogu-078476	Oryza glumaepatula	56.55	3.00e-158	551.00
IUUC-Oin-079267	Oryza indica	56.76	1.00e-158	552.00
IUUC-Olo-080272	Oryza longistaminata	56.76	3.00e-158	551.00
IUUC-Ome-081994	Oryza meridionalis	56.76	1.00e-158	552.00
IUUC-Oni-082607	Oryza nivara	56.76	1.00e-158	552.00
IUUC-Opu-083533	Oryza punctata	56.78	4.00e-160	557.00
IUUC-Oru-084485	Oryza rufipogon	56.76	2.00e-158	551.00
IUUC-Osa-085675	Oryza sativa	56.76	2.00e-158	551.00
IUUC-Ppa-095179	Physcomitrella patens	42.30	4.00e-105	374.00
IUUC-Pop-099631	Populus trichocarpa	63.50	0.00e+00	670.00
IUUC-Ppe-102090	Prunus persica	62.15	0.00e+00	668.00
IUUC-Smo-108901	Selaginella moellendorffii	44.19	2.00e-98	351.00
IUUC-Sit-110702	Setaria italica	56.77	4.00e-153	534.00
IUUC-Sly-110878	Solanum lycopersicum	66.11	0.00e+00	641.00
IUUC-Stu-112399	Solanum tuberosum	63.27	8.00e-180	622.00
IUUC-Sbi-114384	Sorghum bicolor	54.79	2.00e-148	518.00
IUUC-Tca-121388	Theobroma cacao	66.12	0.00e+00	704.00
IUUC-Tae-125186	Triticum aestivum	55.97	3.00e-157	547.00
IUUC-Tur-126520	Triticum urartu	55.79	3.00e-156	545.00
IUUC-Vvi-131268	Vitis vinifera	70.29	0.00e+00	653.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence