iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Obr-076313

Ensembl Protein ID

OB05G10400.1

UniProt Accession

J3M366; J3M366_ORYBR

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OB05G10400	OB05G10400.1	OB05G10400.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	40.00	3.00e-47	186.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Oryza brachyantha

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MAAPEGPVLL FPSTSSASAR VEAVVVFNIC DSYVRRPDQA ERVIGTLLGS VLPDGTVHVR 60
NCYVVPHSES ADQVALDIEY HHNMYASHHK VNPKEVIVGW FSTGFGVSGG STLIHDFYSR 120

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Nucleotide Sequence
(Fasta)

AGGAAGATTC CCCTTCGCGA TGGCCGCGCC GGAGGGCCCC GTGCTGCTCT TCCCCTCCAC 60
CTCGTCGGCG TCCGCCCGTG TGGAGGCTGT CGTCGTCTTC AACATCTGCG ACAGCTACGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0005829--C:cytosol
GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0016020--C:membrane
GO:0005634--C:nucleus
GO:0003743--F:translation initiation factor activity
GO:0009793--P:embryo development ending in seed dormancy
GO:0001731--P:formation of translation preinitiation complex
GO:0009846--P:pollen germination
GO:0006446--P:regulation of translational initiation
GO:0009744--P:response to sucrose

KEGG

obr:102710020

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	79.56	4.00e-131	459.00
IUUC-Aml-001527	Ailuropoda melanoleuca	39.54	2.00e-56	211.00
IUUC-Atr-002686	Amborella trichopoda	70.42	2.00e-106	377.00
IUUC-Apl-003977	Anas platyrhynchos	37.56	5.00e-47	179.00
IUUC-Aca-004335	Anolis carolinensis	38.87	9.00e-58	216.00
IUUC-Aly-005945	Arabidopsis lyrata	72.08	6.00e-110	389.00
IUUC-Ath-007045	Arabidopsis thaliana	71.70	2.00e-108	384.00
IUUC-Acl-008365	Aspergillus clavatus	35.59	6.00e-47	180.00
IUUC-Afl-008742	Aspergillus flavus	34.45	3.00e-44	171.00
IUUC-Afu-009030	Aspergillus fumigatus	35.25	1.00e-46	179.00
IUUC-Ani-009212	Aspergillus nidulans	35.23	2.00e-45	175.00
IUUC-Ang-009712	Aspergillus niger	35.45	4.00e-46	177.00
IUUC-Aor-009885	Aspergillus oryzae	34.78	5.00e-45	173.00
IUUC-Ate-010315	Aspergillus terreus	34.92	1.00e-44	172.00
IUUC-Ame-010801	Astyanax mexicanus	51.81	1.00e-20	92.40
IUUC-Bgr-011982	Blumeria graminis	33.11	2.00e-42	165.00
IUUC-Bta-012804	Bos taurus	38.99	2.00e-57	215.00
IUUC-Bci-013891	Botrytis cinerea	33.22	5.00e-37	147.00
IUUC-Bdi-014328	Brachypodium distachyon	86.28	5.00e-131	459.00
IUUC-Bol-015446	Brassica oleracea	68.73	9.00e-113	398.00
IUUC-Bra-016862	Brassica rapa	70.59	2.00e-111	394.00
IUUC-Cel-018171	Caenorhabditis elegans	27.80	4.00e-28	117.00
IUUC-Cja-019335	Callithrix jacchus	39.54	4.00e-56	211.00
IUUC-Cfa-020138	Canis familiaris	39.16	9.00e-56	209.00
IUUC-Cpo-022109	Cavia porcellus	36.67	4.00e-46	177.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	43.46	7.00e-66	243.00
IUUC-Csa-023994	Chlorocebus sabaeus	39.54	3.00e-56	211.00
IUUC-Cho-024351	Choloepus hoffmanni	29.66	8.00e-31	126.00
IUUC-Cin-025801	Ciona intestinalis	38.64	1.00e-52	199.00
IUUC-Csv-025805	Ciona savignyi	39.02	8.00e-53	199.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	29.33	4.00e-34	137.00
IUUC-Cne-026868	Cryptococcus neoformans	28.29	2.00e-23	102.00
IUUC-Cme-027328	Cyanidioschyzon merolae	26.32	9.00e-20	89.70
IUUC-Dre-028085	Danio rerio	39.16	7.00e-56	209.00
IUUC-Dno-030099	Dasypus novemcinctus	39.54	5.00e-56	210.00
IUUC-Dor-030324	Dipodomys ordii	34.98	3.00e-45	174.00
IUUC-Dse-031314	Dothistroma septosporum	34.98	9.00e-47	179.00
IUUC-Dme-031926	Drosophila melanogaster	37.59	5.00e-52	196.00
IUUC-Ete-032569	Echinops telfairi	38.18	4.00e-53	200.00
IUUC-Eca-033502	Equus caballus	36.82	4.00e-51	194.00
IUUC-Eeu-034883	Erinaceus europaeus	31.32	1.00e-24	105.00
IUUC-Fca-035873	Felis catus	39.54	3.00e-56	211.00
IUUC-Fal-036921	Ficedula albicollis	39.92	2.00e-57	214.00
IUUC-Fox-037765	Fusarium oxysporum	30.43	9.00e-30	123.00
IUUC-Fso-038240	Fusarium solani	30.20	9.00e-31	126.00
IUUC-Gmo-038864	Gadus morhua	38.49	2.00e-57	214.00
IUUC-Ggr-039862	Gaeumannomyces graminis	29.75	3.00e-29	121.00
IUUC-Gga-040952	Gallus gallus	39.92	3.00e-57	214.00
IUUC-Gac-041677	Gasterosteus aculeatus	40.93	1.00e-61	228.00
IUUC-Gma-043061	Glycine max	73.36	2.00e-107	380.00
IUUC-Ggo-045591	Gorilla gorilla	39.54	3.00e-56	211.00
IUUC-Hsa-046860	Homo sapiens	39.54	3.00e-56	211.00
IUUC-Hvu-047410	Hordeum vulgare	87.84	3.00e-76	275.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	39.92	1.00e-56	213.00
IUUC-Lch-049410	Latimeria chalumnae	36.95	9.00e-35	139.00
IUUC-Lpe-051102	Leersia perrieri	97.17	1.00e-143	500.00
IUUC-Loc-052016	Lepisosteus oculatus	36.88	3.00e-47	181.00
IUUC-Lma-053157	Leptosphaeria maculans	34.46	5.00e-47	180.00
IUUC-Laf-054568	Loxodonta africana	39.54	7.00e-56	210.00
IUUC-Mcc-054613	Macaca mulatta	39.54	3.00e-56	211.00
IUUC-Meu-056832	Macropus eugenii	22.71	3.00e-17	80.90
IUUC-Mor-057104	Magnaporthe oryzae	30.47	3.00e-31	128.00
IUUC-Mtr-058445	Medicago truncatula	76.69	2.00e-124	437.00
IUUC-Mla-059038	Melampsora laricipopulina	30.24	2.00e-33	135.00
IUUC-Mga-059548	Meleagris gallopavo	38.33	2.00e-49	187.00
IUUC-Mvi-060520	Microbotryum violaceum	25.59	8.00e-20	90.10
IUUC-Mdo-062376	Monodelphis domestica	39.16	6.00e-57	213.00
IUUC-Mmu-063254	Mus musculus	39.92	7.00e-57	213.00
IUUC-Mac-065635	Musa acuminata	71.33	8.00e-114	402.00
IUUC-Mpu-066314	Mustela putorius furo	39.54	3.00e-56	211.00
IUUC-Mlu-067512	Myotis lucifugus	39.54	1.00e-56	212.00
IUUC-Nfi-068262	Neosartorya fischeri	35.25	1.00e-46	179.00
IUUC-Ncr-068872	Neurospora crassa	30.59	1.00e-32	132.00
IUUC-Nle-070118	Nomascus leucogenys	39.54	3.00e-56	211.00
IUUC-Opr-071228	Ochotona princeps	37.89	1.00e-48	185.00
IUUC-Ont-072600	Oreochromis niloticus	39.16	2.00e-59	221.00
IUUC-Oan-073584	Ornithorhynchus anatinus	37.89	4.00e-49	186.00
IUUC-Ocu-074542	Oryctolagus cuniculus	39.54	1.00e-56	212.00
IUUC-Oba-075923	Oryza barthii	97.54	2.00e-152	530.00
IUUC-Ogl-076932	Oryza glaberrima	97.54	2.00e-152	530.00
IUUC-Ogu-078152	Oryza glumaepatula	97.54	2.00e-152	530.00
IUUC-Oin-079528	Oryza indica	97.54	2.00e-152	530.00
IUUC-Olo-080401	Oryza longistaminata	97.54	2.00e-152	530.00
IUUC-Ome-081553	Oryza meridionalis	97.18	4.00e-152	529.00
IUUC-Oni-082090	Oryza nivara	97.54	2.00e-152	530.00
IUUC-Opu-083583	Oryza punctata	97.54	2.00e-144	503.00
IUUC-Oru-084492	Oryza rufipogon	97.54	2.00e-152	530.00
IUUC-Osa-085383	Oryza sativa	97.54	2.00e-152	530.00
IUUC-Ola-086835	Oryzias latipes	39.92	3.00e-59	221.00
IUUC-Olu-087716	Ostreococcus lucimarinus	34.46	8.00e-40	155.00
IUUC-Oga-088886	Otolemur garnettii	39.16	3.00e-56	211.00
IUUC-Oar-090079	Ovis aries	38.99	1.00e-57	215.00
IUUC-Ptr-091457	Pan troglodytes	39.54	3.00e-56	211.00
IUUC-Pan-092317	Papio anubis	33.15	1.00e-30	125.00
IUUC-Psi-093129	Pelodiscus sinensis	36.58	1.00e-50	192.00
IUUC-Pma-094488	Petromyzon marinus	40.30	1.00e-60	225.00
IUUC-Pno-095049	Phaeosphaeria nodorum	34.80	1.00e-48	185.00
IUUC-Ppa-095341	Physcomitrella patens	58.99	3.00e-102	363.00
IUUC-Pfo-096286	Poecilia formosa	38.27	2.00e-59	221.00
IUUC-Pab-097765	Pongo abelii	39.54	3.00e-56	211.00
IUUC-Pop-099131	Populus trichocarpa	73.52	4.00e-119	419.00
IUUC-Pca-100524	Procavia capensis	30.53	2.00e-31	128.00
IUUC-Ppe-101934	Prunus persica	73.78	2.00e-125	440.00
IUUC-Pva-102577	Pteropus vampyrus	39.92	8.00e-57	213.00
IUUC-Pgr-103521	Puccinia graminis	29.35	5.00e-33	134.00
IUUC-Pte-104304	Pyrenophora teres	34.80	8.00e-49	186.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	34.80	2.00e-48	185.00
IUUC-Rno-105717	Rattus norvegicus	39.92	6.00e-57	213.00
IUUC-Sha-107190	Sarcophilus harrisii	39.38	3.00e-56	211.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	33.33	3.00e-41	161.00
IUUC-Spo-108355	Schizosaccharomyces pombe	32.61	5.00e-41	160.00
IUUC-Smo-109374	Selaginella moellendorffii	60.14	4.00e-105	373.00
IUUC-Sit-110119	Setaria italica	92.08	3.00e-136	476.00
IUUC-Sly-111570	Solanum lycopersicum	72.28	2.00e-106	377.00
IUUC-Stu-112308	Solanum tuberosum	74.39	1.00e-118	417.00
IUUC-Sar-113515	Sorex araneus	34.74	8.00e-14	68.90
IUUC-Sbi-114605	Sorghum bicolor	91.32	7.00e-135	472.00
IUUC-Sre-114906	Sporisorium reilianum	35.77	3.00e-43	167.00
IUUC-Tgu-117087	Taeniopygia guttata	37.89	4.00e-49	186.00
IUUC-Tru-117700	Takifugu rubripes	40.30	2.00e-61	228.00
IUUC-Tni-120470	Tetraodon nigroviridis	39.54	3.00e-59	221.00
IUUC-Tca-121109	Theobroma cacao	76.22	4.00e-114	403.00
IUUC-Tre-122095	Trichoderma reesei	30.71	7.00e-31	127.00
IUUC-Tvi-122580	Trichoderma virens	30.36	3.00e-30	124.00
IUUC-Tae-125129	Triticum aestivum	87.33	5.00e-138	482.00
IUUC-Tur-126658	Triticum urartu	77.94	2.00e-121	427.00
IUUC-Tme-127043	Tuber melanosporum	35.05	1.00e-45	176.00
IUUC-Tbe-127927	Tupaia belangeri	39.54	3.00e-56	211.00
IUUC-Ttr-129231	Tursiops truncatus	39.54	2.00e-56	211.00
IUUC-Uma-129578	Ustilago maydis	35.77	2.00e-42	165.00
IUUC-Vda-129730	Verticillium dahliae	29.71	7.00e-34	137.00
IUUC-Vpa-130677	Vicugna pacos	45.95	9.00e-03	33.50
IUUC-Vvi-130968	Vitis vinifera	74.65	7.00e-120	422.00
IUUC-Xtr-132203	Xenopus tropicalis	39.16	2.00e-54	204.00
IUUC-Xma-133972	Xiphophorus maculatus	38.78	9.00e-59	219.00
IUUC-Yli-134553	Yarrowia lipolytica	32.60	8.00e-34	136.00
IUUC-Zma-134941	Zea mays	88.68	5.00e-123	432.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence