iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099911

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000346

Gene Name

POPTRDRAFT_724669; POPTR_0010s20910g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0010s20910	POPTR_0010s20910.1	POPTR_0010s20910.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.80e-08	34.8	214	255

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cle     +  ++lpC H+fha+C+  w       +++ +CP+C+
   Q: 214  CSVCLEQVsmGEVIRTLPCLHQFHANCIDPW------LRQQGTCPVCK 255
           9*****554477799****************......**********7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSFVFRGARS DIENGFPSFV PERRTLRVHA TRPVNSNSLV FLVTVLLLFM ILNSHQMSPN 60
FLLWLVLGVF FMATTLRMYA TCQQLQAQAQ AHAVMASGLL GHTELRLHMP PSIALATRGR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTAACAAAT AATAACGGAC GCAATGGTTC ACAAAACGGA AGGAACCGAG TATTGGCTTC 60
GGGGAGTCGA CAAAGGTTGA AATGAAAGCG TTGGTTTTAG GCAACAAAAC AAAAGGAAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0010s20910g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Fso-038141	Fusarium solani	48.48	1.00e-15	77.80
IUUC-Gma-044260	Glycine max	84.93	5.00e-110	389.00
IUUC-Hvu-047764	Hordeum vulgare	66.67	1.00e-68	252.00
IUUC-Lpe-051371	Leersia perrieri	67.61	2.00e-75	274.00
IUUC-Mtr-058078	Medicago truncatula	83.33	1.00e-106	378.00
IUUC-Mac-065090	Musa acuminata	69.34	4.00e-73	267.00
IUUC-Ogu-078414	Oryza glumaepatula	59.86	7.00e-61	226.00
IUUC-Opu-084125	Oryza punctata	68.07	4.00e-75	273.00
IUUC-Oru-085061	Oryza rufipogon	59.86	7.00e-61	226.00
IUUC-Ppe-101792	Prunus persica	83.75	4.00e-105	373.00
IUUC-Sly-111915	Solanum lycopersicum	82.31	4.00e-98	350.00
IUUC-Stu-112568	Solanum tuberosum	72.54	3.00e-85	309.00
IUUC-Sar-113693	Sorex araneus	40.85	2.00e-12	67.40
IUUC-Sbi-113958	Sorghum bicolor	67.02	2.00e-79	288.00
IUUC-Tca-121289	Theobroma cacao	81.52	1.00e-96	345.00
IUUC-Tae-125370	Triticum aestivum	65.37	3.00e-67	248.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence