iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114088

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000765

Gene Name

SORBI_006G196400

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb06g026870	Sb06g026870.1	Sb06g026870.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.90e-32	112.0	6	79

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggk.tcPvtrqplteedlvPnltlrrliqawceenss 74
           +p+ flCpIs+elM+dPv++++G+tydr+sIe+w+ ++gk tcP t+q+l + dl+Pn+tl+r+i+ w+++ ss
   Q: 6    PPQLFLCPISMELMEDPVTVSTGVTYDRRSIERWFFKYGKtTCPATMQRLNSFDLTPNHTLKRVISTWLDRASS 79
           799********************************998888****************************99876 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MAMEEPPQLF LCPISMELME DPVTVSTGVT YDRRSIERWF FKYGKTTCPA TMQRLNSFDL 60
TPNHTLKRVI STWLDRASSS SSSTPLCTKL AREKLPSVLA GIEATPFKVT ALKNLRRCMD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACCGTCCCTC TCAGACATGC TACTTTGTTT TCTGTACAAA CCTGAAGCCA AGAATCCTGC 60
TTTAGTCTTG ATTGGTTGCC AGTTTCAGCT GCTTGGATTT GCCCCAGATA GAGTTCGATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_06g026870

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002928	Amborella trichopoda	43.86	9.00e-98	349.00
IUUC-Bdi-014881	Brachypodium distachyon	70.77	5.00e-130	456.00
IUUC-Hvu-047092	Hordeum vulgare	76.68	5.00e-146	509.00
IUUC-Lpe-051020	Leersia perrieri	74.60	9.00e-149	518.00
IUUC-Mac-064665	Musa acuminata	50.00	6.00e-104	369.00
IUUC-Oba-074977	Oryza barthii	79.69	2.00e-129	454.00
IUUC-Obr-076700	Oryza brachyantha	78.66	2.00e-154	537.00
IUUC-Ogl-077950	Oryza glaberrima	78.30	3.00e-162	563.00
IUUC-Ogu-078575	Oryza glumaepatula	78.54	1.00e-162	565.00
IUUC-Oin-079500	Oryza indica	78.54	6.00e-163	565.00
IUUC-Oni-082805	Oryza nivara	78.54	6.00e-163	565.00
IUUC-Opu-083721	Oryza punctata	80.33	4.00e-168	583.00
IUUC-Oru-084349	Oryza rufipogon	78.07	5.00e-162	563.00
IUUC-Osa-086088	Oryza sativa	77.83	2.00e-161	561.00
IUUC-Ppe-101339	Prunus persica	43.50	2.00e-79	288.00
IUUC-Sit-110629	Setaria italica	86.44	2.00e-175	607.00
IUUC-Sly-111695	Solanum lycopersicum	43.03	5.00e-88	317.00
IUUC-Stu-112376	Solanum tuberosum	43.77	4.00e-89	320.00
IUUC-Tae-124754	Triticum aestivum	77.75	3.00e-145	507.00
IUUC-Tur-126771	Triticum urartu	54.59	7.00e-99	352.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence