iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114420

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000765

Gene Name

SORBI_006G019300

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb06g001810	Sb06g001810.1	Sb06g001810.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-49	163.9	528	567
UBD/Beta-Prp	9.40e-67	226.1	405	600

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH  +v+++af +d  +l+sGs D  +++W++++g+ lk+
   Q: 528  GHRQPVYSVAFsPDgEYLASGSLDQCLHIWSVKEGRILKT 567
           8***********999********************99875 PP

UBD/Beta-Prp

   S: 20   pdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp.........sg 106
           ++++ +at s+d++i v ++ ++  ++++sgh++ev+a+k++p+g++l+++s+D t+k+w++++ kc+  +k+h+++++++++sp         ++
   Q: 405  RNNNSFATCSTDNMIYVCKIGEQRPVKTFSGHQNEVNAIKWDPTGSFLASCSDDWTAKIWSMKQDKCLFDFKEHTKEIYTIRWSPtgpgtnnpnQQ 500
           67788********************************************************************************88888776333 PP
   S: 107  dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldg 202
             l+s+s d+ti++w++e+g  l+  lsgh++ v +v+++pdg +l+sGslD+++ +W++k g++l+t +g   + +  + ++++g  ++++  ++
   Q: 501  LLLASASFDSTIKLWEVEHGRLLY-SLSGHRQPVYSVAFSPDGEYLASGSLDQCLHIWSVKEGRILKTYRG--SGGIFEVCWNKEGSKIAACFSNN 593
           6899********************.********************************************99..9********************** PP
   S: 203  tvklwdl 209
           tv + d+
   Q: 594  TVCVMDF 600
           **99887 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MTHSHPSQRH TTTSHAAVLA LAAPSLPVPS AAPTAPSPPP AMGVLTSTEL NFLVFRYLQE 60
SGFIHAAFTL GYEAGIHKGG IDGNAVPPGA LITIVQKGLQ YIELEANNDE NDDEVERDFA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCGTGTGCC TGGAAGACGC TTTCATGACA CACTCCCACC CTTCTCAGCG ACACACAACC 60
ACATCGCACG CCGCCGTTCT AGCCCTCGCC GCCCCGTCCC TCCCCGTCCC CTCCGCCGCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0000118--C:histone deacetylase complex
GO:0003714--F:transcription corepressor activity
GO:0016575--P:histone deacetylation
GO:0006357--P:regulation of transcription from RNA polymerase II promoter
GO:0009409--P:response to cold

KEGG

sbi:SORBI_06g001810

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000916	Aegilops tauschii	92.25	4.00e-79	285.00
IUUC-Aml-001717	Ailuropoda melanoleuca	63.19	1.00e-134	472.00
IUUC-Atr-002514	Amborella trichopoda	80.43	0.00e+00	640.00
IUUC-Apl-003708	Anas platyrhynchos	63.19	1.00e-134	472.00
IUUC-Aca-004611	Anolis carolinensis	62.91	3.00e-134	471.00
IUUC-Aly-005622	Arabidopsis lyrata	71.43	2.00e-155	541.00
IUUC-Ath-007137	Arabidopsis thaliana	69.60	2.00e-157	548.00
IUUC-Ame-011601	Astyanax mexicanus	63.66	1.00e-136	478.00
IUUC-Bta-012418	Bos taurus	62.64	1.00e-141	495.00
IUUC-Bdi-014315	Brachypodium distachyon	89.13	0.00e+00	939.00
IUUC-Bol-016277	Brassica oleracea	68.91	7.00e-159	553.00
IUUC-Bra-016944	Brassica rapa	68.65	1.00e-158	551.00
IUUC-Cja-018832	Callithrix jacchus	63.19	1.00e-134	472.00
IUUC-Cfa-020029	Canis familiaris	63.19	9.00e-135	472.00
IUUC-Cpo-021682	Cavia porcellus	61.39	7.00e-141	492.00
IUUC-Cre-022979	Chlamydomonas reinhardtii	61.48	6.00e-130	456.00
IUUC-Csa-024075	Chlorocebus sabaeus	63.19	9.00e-135	472.00
IUUC-Cin-025704	Ciona intestinalis	48.24	2.00e-154	538.00
IUUC-Csv-026257	Ciona savignyi	49.91	7.00e-152	529.00
IUUC-Cne-026946	Cryptococcus neoformans	32.65	4.00e-27	115.00
IUUC-Cme-027258	Cyanidioschyzon merolae	44.08	6.00e-100	357.00
IUUC-Dre-027906	Danio rerio	62.84	1.00e-135	475.00
IUUC-Dno-029196	Dasypus novemcinctus	63.19	6.00e-135	473.00
IUUC-Dor-030732	Dipodomys ordii	63.13	1.00e-130	459.00
IUUC-Dme-031939	Drosophila melanogaster	59.36	1.00e-127	449.00
IUUC-Ete-033150	Echinops telfairi	62.54	3.00e-119	421.00
IUUC-Eca-033897	Equus caballus	61.39	9.00e-141	492.00
IUUC-Eeu-034952	Erinaceus europaeus	56.39	2.00e-113	402.00
IUUC-Fca-035734	Felis catus	63.19	8.00e-135	473.00
IUUC-Fal-037185	Ficedula albicollis	63.19	8.00e-135	473.00
IUUC-Gmo-038870	Gadus morhua	62.91	4.00e-141	493.00
IUUC-Gga-041161	Gallus gallus	63.19	5.00e-135	473.00
IUUC-Gac-041844	Gasterosteus aculeatus	63.19	5.00e-143	500.00
IUUC-Gma-044208	Glycine max	65.49	0.00e+00	729.00
IUUC-Ggo-044882	Gorilla gorilla	63.19	9.00e-135	472.00
IUUC-Hsa-046488	Homo sapiens	63.19	9.00e-135	472.00
IUUC-Itr-047958	Ictidomys tridecemlineatus	63.19	9.00e-134	468.00
IUUC-Kpa-049338	Komagataella pastoris	29.30	4.00e-32	131.00
IUUC-Lch-050672	Latimeria chalumnae	62.91	3.00e-134	471.00
IUUC-Lpe-051084	Leersia perrieri	85.03	0.00e+00	933.00
IUUC-Loc-052030	Lepisosteus oculatus	63.74	3.00e-144	504.00
IUUC-Laf-054280	Loxodonta africana	62.91	2.00e-142	498.00
IUUC-Mcc-055203	Macaca mulatta	63.19	1.00e-134	472.00
IUUC-Meu-056563	Macropus eugenii	70.46	1.00e-97	348.00
IUUC-Mtr-058624	Medicago truncatula	61.00	0.00e+00	716.00
IUUC-Mga-059660	Meleagris gallopavo	63.19	5.00e-135	473.00
IUUC-Mvi-060557	Microbotryum violaceum	36.46	4.00e-70	258.00
IUUC-Mmr-060925	Microcebus murinus	63.19	4.00e-134	470.00
IUUC-Mdo-062078	Monodelphis domestica	62.91	2.00e-134	471.00
IUUC-Mmu-063603	Mus musculus	63.74	1.00e-135	475.00
IUUC-Mac-065508	Musa acuminata	72.41	2.00e-178	617.00
IUUC-Mpu-066741	Mustela putorius furo	63.19	9.00e-135	472.00
IUUC-Mlu-068152	Myotis lucifugus	63.19	6.00e-135	473.00
IUUC-Nle-069229	Nomascus leucogenys	63.19	9.00e-135	472.00
IUUC-Opr-070277	Ochotona princeps	51.96	2.00e-99	355.00
IUUC-Ont-071569	Oreochromis niloticus	64.01	1.00e-144	505.00
IUUC-Oan-073562	Ornithorhynchus anatinus	49.82	1.00e-159	555.00
IUUC-Ocu-074280	Oryctolagus cuniculus	63.19	6.00e-135	473.00
IUUC-Oba-075618	Oryza barthii	86.63	0.00e+00	905.00
IUUC-Obr-076718	Oryza brachyantha	78.35	0.00e+00	869.00
IUUC-Ogl-077302	Oryza glaberrima	89.48	0.00e+00	954.00
IUUC-Ogu-078718	Oryza glumaepatula	89.66	0.00e+00	954.00
IUUC-Oin-079515	Oryza indica	82.55	0.00e+00	671.00
IUUC-Olo-080427	Oryza longistaminata	81.18	0.00e+00	838.00
IUUC-Ome-081696	Oryza meridionalis	88.59	0.00e+00	936.00
IUUC-Oni-082137	Oryza nivara	89.66	0.00e+00	954.00
IUUC-Opu-083505	Oryza punctata	86.63	0.00e+00	906.00
IUUC-Oru-085276	Oryza rufipogon	89.48	0.00e+00	954.00
IUUC-Osa-085791	Oryza sativa	89.66	0.00e+00	954.00
IUUC-Ola-087365	Oryzias latipes	62.64	8.00e-142	496.00
IUUC-Olu-087589	Ostreococcus lucimarinus	65.18	5.00e-151	526.00
IUUC-Oga-088357	Otolemur garnettii	60.16	4.00e-124	437.00
IUUC-Oar-089214	Ovis aries	62.91	2.00e-142	498.00
IUUC-Ptr-091532	Pan troglodytes	63.19	9.00e-135	472.00
IUUC-Pan-091927	Papio anubis	63.19	9.00e-135	472.00
IUUC-Psi-093941	Pelodiscus sinensis	63.01	4.00e-133	467.00
IUUC-Pma-094105	Petromyzon marinus	60.15	9.00e-40	156.00
IUUC-Ppa-095868	Physcomitrella patens	79.12	9.00e-171	592.00
IUUC-Pfo-096158	Poecilia formosa	62.91	7.00e-143	499.00
IUUC-Pab-098705	Pongo abelii	63.19	9.00e-135	472.00
IUUC-Pop-098989	Populus trichocarpa	77.78	1.00e-171	595.00
IUUC-Pca-100256	Procavia capensis	62.78	1.00e-131	462.00
IUUC-Ppe-101572	Prunus persica	64.84	0.00e+00	674.00
IUUC-Pva-102616	Pteropus vampyrus	63.13	2.00e-131	461.00
IUUC-Rno-105411	Rattus norvegicus	63.74	2.00e-135	474.00
IUUC-Sce-106132	Saccharomyces cerevisiae	24.14	1.00e-30	127.00
IUUC-Sha-106636	Sarcophilus harrisii	62.91	3.00e-134	471.00
IUUC-Smo-109301	Selaginella moellendorffii	78.18	7.00e-175	605.00
IUUC-Sit-110710	Setaria italica	93.05	0.00e+00	955.00
IUUC-Sly-111336	Solanum lycopersicum	77.89	7.00e-178	616.00
IUUC-Stu-112786	Solanum tuberosum	57.80	0.00e+00	654.00
IUUC-Sar-112971	Sorex araneus	55.12	6.00e-119	420.00
IUUC-Sre-115175	Sporisorium reilianum	43.08	1.00e-58	221.00
IUUC-Ssc-115695	Sus scrofa	63.19	8.00e-135	473.00
IUUC-Tgu-116898	Taeniopygia guttata	61.13	3.00e-140	491.00
IUUC-Tru-118254	Takifugu rubripes	63.74	1.00e-143	502.00
IUUC-Tsy-119424	Tarsius syrichta	50.14	3.00e-93	335.00
IUUC-Tni-120861	Tetraodon nigroviridis	63.56	2.00e-142	498.00
IUUC-Tca-121739	Theobroma cacao	72.54	4.00e-173	600.00
IUUC-Tae-125368	Triticum aestivum	87.94	0.00e+00	934.00
IUUC-Tur-126856	Triticum urartu	83.21	4.00e-168	583.00
IUUC-Tme-127126	Tuber melanosporum	34.91	9.00e-50	190.00
IUUC-Tbe-127767	Tupaia belangeri	64.98	2.00e-120	424.00
IUUC-Ttr-128826	Tursiops truncatus	62.05	2.00e-124	438.00
IUUC-Uma-129469	Ustilago maydis	43.48	3.00e-59	222.00
IUUC-Vpa-130768	Vicugna pacos	62.78	1.00e-131	462.00
IUUC-Vvi-131193	Vitis vinifera	75.25	4.00e-176	610.00
IUUC-Xtr-132842	Xenopus tropicalis	59.78	6.00e-126	443.00
IUUC-Xma-134168	Xiphophorus maculatus	63.46	1.00e-143	501.00
IUUC-Yli-134648	Yarrowia lipolytica	28.87	7.00e-43	167.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence