iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099555

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000339

Gene Name

POPTRDRAFT_413045; POPTR_0003s20780g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0003s20780	POPTR_0003s20780.1	POPTR_0003s20780.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.00e-06	30.2	251	292

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl+df    +  + +pC+H fh  C+  w         + +CP+Cr
   Q: 251  CSVCLDDFeigAE-AREMPCKHKFHSGCILPW------LELHSSCPVCR 292
           ********77433.899***************......**********8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MFVGEGGEGG QTMAARYWCH MCSQMVNPIM GVEIKCPFCQ NGFIEDMIDS TGDNQVPDSE 60
FGSDRALSLW APVLLGMVGN SHRRRRLRRV EYEEDEDGND DGEANHAGEP EFEREIESFM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCACTGG TAAATTGGCA AATGGGAATC TAAGGTAGCT CTTTCTCGCT TCTTCTTCTT 60
GGTTGTTTTT TATTTTTTGG TTCCTTTCCC TGTCAGCCCT CTCTTTCCTC TTCTCCACCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0003s20780g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000247	Aegilops tauschii	38.68	5.00e-48	184.00
IUUC-Atr-003093	Amborella trichopoda	59.67	1.00e-76	279.00
IUUC-Aly-006367	Arabidopsis lyrata	57.56	2.00e-99	355.00
IUUC-Bdi-014762	Brachypodium distachyon	60.45	3.00e-33	135.00
IUUC-Bra-016653	Brassica rapa	52.65	2.00e-86	313.00
IUUC-Mac-065169	Musa acuminata	53.71	1.00e-39	156.00
IUUC-Oba-075441	Oryza barthii	57.23	2.00e-45	175.00
IUUC-Ogl-077359	Oryza glaberrima	57.23	2.00e-45	175.00
IUUC-Ogu-078243	Oryza glumaepatula	56.60	4.00e-45	174.00
IUUC-Oin-079349	Oryza indica	57.86	4.00e-46	178.00
IUUC-Olo-080400	Oryza longistaminata	57.41	1.00e-46	179.00
IUUC-Oni-082403	Oryza nivara	56.60	9.00e-45	173.00
IUUC-Oru-085092	Oryza rufipogon	57.23	3.00e-45	175.00
IUUC-Osa-085947	Oryza sativa	57.86	4.00e-46	178.00
IUUC-Sit-110378	Setaria italica	52.31	9.00e-31	126.00
IUUC-Sly-110912	Solanum lycopersicum	64.92	3.00e-67	247.00
IUUC-Sbi-114729	Sorghum bicolor	55.75	6.00e-48	184.00
IUUC-Tae-122764	Triticum aestivum	60.58	9.00e-36	143.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence