iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-017612

Ensembl Protein ID

Bra015971.1-P

UniProt Accession

M4DHJ4; M4DHJ4_BRARP

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra015971	Bra015971.1	Bra015971.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.60e-32	109.7	262	297
UBD/Beta-Prp	1.60e-48	166.4	212	511

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           H + v c++f  d  +l+sGs Dg+ikvW++rtg +
   Q: 262  HDEAVLCIDFsKDsEMLASGSQDGKIKVWRIRTGLC 297
           8899*******666*******************987 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlk.ghed 95
            ks   c  fspd+++l+++s dg i+vwd+ +gkl         +++  h+++v +++fs+d+++l++gs+D+ ikvw ++tg c++ l+ +h++
   Q: 212  TKSHAECARFSPDGQFLVSSSVDGFIEVWDYISGKLkkdlqyqaEETFMMHDEAVLCIDFSKDSEMLASGSQDGKIKVWRIRTGLCFRRLErAHSE 307
           5677899*****************************999999998999999999************************************989*** PP
   S: 96   svlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl......tgghtdsvys 185
            v+sl+fs++g  l+s+s d t+r+  l++g+ l+  ++gh++ vn + + +dg  ++++s D tv++Wd+kt ++l+t+      +g  + sv+s
   Q: 308  GVTSLTFSRDGTQLLSTSFDHTARIHGLKSGKLLK-EFRGHTSYVNNAIFTSDGTRVITASSDCTVKVWDSKTTDCLQTFkpppslRG-SEASVNS 401
           ***********************************.*************************************************776.9****** PP
   S: 186  ls.fdsngkelvsgsldgtvklwdlqtgecvrtlng.htdnvksvrfs..pnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgd 277
           +  f +n +++v + + +++ +  lq g++v+++    ++    v+++   +++++++ ++D+ ++++ ++++ l + +  h++ vi  ++ ++ +
   Q: 402  VHlFPKNTEHIVVCNKTSSIYIMTLQ-GQVVKSFSSgKREGGDFVAACvsTKGDWIYCLGEDKKLYCFSYQTSGLEHFMMVHEKDVIGLSH-HPHR 495
           **9999*******************6.6677777651555555555545578***************************************.**** PP
   S: 278  nvlvlgsedskvniwk 293
           n +++ s+d++ ++wk
   Q: 496  NLIATYSADCTMKLWK 511
           ***************8 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MALEIEARDV IKIVLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFVSD INSGRWDSVL 60
PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT QVMGVMKQEE PERYLRMEHL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGCTCG AAATCGAAGC TCGAGAGTAA GCTTTCTCTT TTCTTTTTTA TTTTCTTTTT 60
TAGACGCAGT TACTGTGCTC CTAGAATCAT CGTCTACGAT TGCTCAGATG GATCTCTAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0008380--P:RNA splicing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000857	Aegilops tauschii	86.11	9.00e-74	268.00
IUUC-Aml-001330	Ailuropoda melanoleuca	64.91	0.00e+00	723.00
IUUC-Atr-002570	Amborella trichopoda	85.32	0.00e+00	943.00
IUUC-Apl-003826	Anas platyrhynchos	65.38	0.00e+00	694.00
IUUC-Aca-005183	Anolis carolinensis	64.66	0.00e+00	717.00
IUUC-Aly-005632	Arabidopsis lyrata	92.77	0.00e+00	1016.00
IUUC-Ath-007219	Arabidopsis thaliana	91.80	0.00e+00	1004.00
IUUC-Ame-011374	Astyanax mexicanus	63.94	0.00e+00	715.00
IUUC-Bta-012890	Bos taurus	64.91	0.00e+00	723.00
IUUC-Bdi-014061	Brachypodium distachyon	82.97	0.00e+00	925.00
IUUC-Bol-016332	Brassica oleracea	99.80	0.00e+00	1068.00
IUUC-Cel-018238	Caenorhabditis elegans	51.27	8.00e-166	576.00
IUUC-Cja-019336	Callithrix jacchus	64.91	0.00e+00	723.00
IUUC-Cfa-021108	Canis familiaris	64.91	0.00e+00	723.00
IUUC-Cpo-022052	Cavia porcellus	64.91	0.00e+00	723.00
IUUC-Cre-022595	Chlamydomonas reinhardtii	65.23	0.00e+00	736.00
IUUC-Csa-023488	Chlorocebus sabaeus	64.91	0.00e+00	723.00
IUUC-Cho-025010	Choloepus hoffmanni	57.31	2.00e-178	618.00
IUUC-Cin-025251	Ciona intestinalis	62.65	0.00e+00	693.00
IUUC-Csv-026092	Ciona savignyi	58.13	0.00e+00	628.00
IUUC-Dre-027382	Danio rerio	64.33	0.00e+00	714.00
IUUC-Dno-029007	Dasypus novemcinctus	65.11	0.00e+00	723.00
IUUC-Dor-030180	Dipodomys ordii	56.28	2.00e-128	451.00
IUUC-Dme-031762	Drosophila melanogaster	61.21	0.00e+00	689.00
IUUC-Ete-032933	Echinops telfairi	64.19	2.00e-172	597.00
IUUC-Eca-033864	Equus caballus	65.08	0.00e+00	710.00
IUUC-Eeu-034635	Erinaceus europaeus	59.38	1.00e-150	525.00
IUUC-Fca-036119	Felis catus	64.91	0.00e+00	723.00
IUUC-Fal-037396	Ficedula albicollis	65.53	0.00e+00	704.00
IUUC-Gmo-038962	Gadus morhua	63.55	0.00e+00	707.00
IUUC-Gga-040134	Gallus gallus	65.11	0.00e+00	723.00
IUUC-Gac-041630	Gasterosteus aculeatus	63.35	0.00e+00	711.00
IUUC-Gma-043928	Glycine max	87.65	0.00e+00	966.00
IUUC-Ggo-045061	Gorilla gorilla	64.66	0.00e+00	717.00
IUUC-Hsa-046215	Homo sapiens	64.91	0.00e+00	723.00
IUUC-Hvu-047799	Hordeum vulgare	83.06	0.00e+00	650.00
IUUC-Itr-048826	Ictidomys tridecemlineatus	64.91	0.00e+00	723.00
IUUC-Lch-050209	Latimeria chalumnae	60.51	0.00e+00	660.00
IUUC-Lpe-050740	Leersia perrieri	83.53	0.00e+00	929.00
IUUC-Loc-052739	Lepisosteus oculatus	59.73	0.00e+00	653.00
IUUC-Laf-053895	Loxodonta africana	64.79	0.00e+00	718.00
IUUC-Mcc-055183	Macaca mulatta	64.91	0.00e+00	723.00
IUUC-Mtr-057730	Medicago truncatula	85.88	0.00e+00	926.00
IUUC-Mga-059222	Meleagris gallopavo	66.03	7.00e-173	599.00
IUUC-Mmr-061749	Microcebus murinus	65.08	0.00e+00	711.00
IUUC-Mdo-062920	Monodelphis domestica	64.72	0.00e+00	721.00
IUUC-Mmu-063228	Mus musculus	64.91	0.00e+00	723.00
IUUC-Mac-065084	Musa acuminata	84.51	0.00e+00	939.00
IUUC-Mpu-066162	Mustela putorius furo	64.91	0.00e+00	723.00
IUUC-Mlu-067471	Myotis lucifugus	64.13	0.00e+00	716.00
IUUC-Nle-070129	Nomascus leucogenys	64.91	0.00e+00	723.00
IUUC-Opr-071176	Ochotona princeps	65.08	0.00e+00	710.00
IUUC-Ont-071830	Oreochromis niloticus	63.74	0.00e+00	716.00
IUUC-Oan-072778	Ornithorhynchus anatinus	65.11	0.00e+00	723.00
IUUC-Ocu-074570	Oryctolagus cuniculus	64.91	0.00e+00	723.00
IUUC-Oba-075507	Oryza barthii	83.33	0.00e+00	931.00
IUUC-Obr-076672	Oryza brachyantha	84.71	0.00e+00	943.00
IUUC-Ogl-077110	Oryza glaberrima	83.33	0.00e+00	931.00
IUUC-Ogu-077976	Oryza glumaepatula	83.33	0.00e+00	931.00
IUUC-Oin-079525	Oryza indica	83.33	0.00e+00	931.00
IUUC-Olo-080391	Oryza longistaminata	80.95	0.00e+00	921.00
IUUC-Oni-082778	Oryza nivara	83.33	0.00e+00	931.00
IUUC-Opu-083710	Oryza punctata	83.56	0.00e+00	934.00
IUUC-Oru-084250	Oryza rufipogon	83.33	0.00e+00	931.00
IUUC-Osa-085363	Oryza sativa	83.33	0.00e+00	931.00
IUUC-Ola-087092	Oryzias latipes	63.94	0.00e+00	714.00
IUUC-Olu-087753	Ostreococcus lucimarinus	53.59	1.00e-151	529.00
IUUC-Oga-088278	Otolemur garnettii	60.58	0.00e+00	645.00
IUUC-Oar-089664	Ovis aries	64.53	0.00e+00	718.00
IUUC-Ptr-090991	Pan troglodytes	64.91	0.00e+00	723.00
IUUC-Pan-092697	Papio anubis	64.91	0.00e+00	723.00
IUUC-Psi-093204	Pelodiscus sinensis	65.33	0.00e+00	704.00
IUUC-Ppa-095325	Physcomitrella patens	81.18	0.00e+00	899.00
IUUC-Pfo-096988	Poecilia formosa	63.74	0.00e+00	714.00
IUUC-Pab-098288	Pongo abelii	64.91	0.00e+00	723.00
IUUC-Pop-098787	Populus trichocarpa	85.74	0.00e+00	954.00
IUUC-Pca-100583	Procavia capensis	60.71	0.00e+00	643.00
IUUC-Ppe-101307	Prunus persica	86.47	0.00e+00	955.00
IUUC-Pva-102711	Pteropus vampyrus	64.91	0.00e+00	723.00
IUUC-Rno-105614	Rattus norvegicus	64.91	0.00e+00	723.00
IUUC-Sha-107017	Sarcophilus harrisii	64.91	0.00e+00	723.00
IUUC-Smo-108800	Selaginella moellendorffii	76.17	0.00e+00	822.00
IUUC-Sit-110278	Setaria italica	84.12	0.00e+00	911.00
IUUC-Sly-111777	Solanum lycopersicum	85.69	0.00e+00	946.00
IUUC-Stu-112293	Solanum tuberosum	85.69	0.00e+00	947.00
IUUC-Sar-112955	Sorex araneus	58.56	0.00e+00	628.00
IUUC-Sbi-114802	Sorghum bicolor	83.73	0.00e+00	905.00
IUUC-Ssc-116054	Sus scrofa	64.91	0.00e+00	723.00
IUUC-Tgu-116909	Taeniopygia guttata	64.45	0.00e+00	714.00
IUUC-Tru-118195	Takifugu rubripes	64.52	0.00e+00	722.00
IUUC-Tsy-119420	Tarsius syrichta	59.26	0.00e+00	637.00
IUUC-Tni-120416	Tetraodon nigroviridis	63.94	0.00e+00	716.00
IUUC-Tca-121653	Theobroma cacao	86.33	0.00e+00	938.00
IUUC-Tae-125609	Triticum aestivum	83.33	0.00e+00	927.00
IUUC-Tur-126197	Triticum urartu	81.69	0.00e+00	660.00
IUUC-Tbe-128009	Tupaia belangeri	65.38	2.00e-137	481.00
IUUC-Ttr-128719	Tursiops truncatus	58.48	0.00e+00	639.00
IUUC-Vpa-130579	Vicugna pacos	64.52	0.00e+00	714.00
IUUC-Vvi-131127	Vitis vinifera	87.06	0.00e+00	960.00
IUUC-Xtr-132950	Xenopus tropicalis	60.35	0.00e+00	660.00
IUUC-Xma-133537	Xiphophorus maculatus	63.74	0.00e+00	714.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence