iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099953

Ensembl Protein ID

POPTR_0010s20960.1

UniProt Accession

B9HTH1; B9HTH1_POPTR

Genbank Protein ID

EEF01388.2

Protein Name

B-type cell cycle switch protein ccs52B

Genbank Nucleotide ID

CM000346

Gene Name

POPTRDRAFT_833809; POPTR_0010s20960g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0010s20960	POPTR_0010s20960.1	POPTR_0010s20960.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.80e-26	90.2	300	334
E3 adaptor/Cullin RING/APC_C/CDC20	2.40e-140	468.2	166	467
UBD/Beta-Prp	1.50e-54	186.4	220	461

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           gH+++v++l++ +d + l+sG++D+++ vW+ +++
   Q: 300  GHKSEVCGLKWsHDdRELASGGNDNQLLVWNQHSQ 334
           8***********55599**************7666 PP

E3 adaptor/Cullin RING/APC_C/CDC20

   S: 1    pekvldapelrddfylnLldWssknvlavaLgssvylwsaktgdvskladleekdlvtsvswieegtllavGtkkgeveiyDveekkkvrt 91
           p+kvldap+l+ddfylnL+dWss+nvlav+Lg++vylw a++++v++l+dl ++d+v+s++w++eg+++++Gt+ g+v+++D +++k+vrt
   Q: 166  PHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPNDSVCSLQWTREGSYISIGTHLGQVQVWDGTQCKRVRT 256
           689**************************************************************************************** PP
   S: 92   ltghsarvgaLsWnaevlssGsrdgeilhrdvrvkelklstlqahaqevCGlkwnedaklLasGGnDnsvsvwdasssePlkkfkehkaav 182
           + gh++r + L+Wn+ +l+sGsrd++il++d+rv+  ++s+l +h++evCGlkw++d+++LasGGnDn++ vw+++s+ P+ + +eh+aav
   Q: 257  MGGHQTRTSVLAWNSRTLASGSRDRNILQHDLRVSSDHVSKLIGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQLPVLTLTEHTAAV 347
           ******************************************************************************************* PP
   S: 183  kaiawsPwqkslLasGGGtaDrcikfwntltgalleeidtgsqvcsllwskkskelvsthGfaenkitlwkypslskvaelkgheaRvlsl 273
           kaiawsP+q++lLasGGGtaDrci+fwnt++g++l+++dtgsqvc+l+wsk+ +elvsthG+++n+i++wkypslskva+l gh++Rvl+l
   Q: 348  KAIAWSPHQSGLLASGGGTADRCIRFWNTTNGHQLNHVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLSKVATLVGHSMRVLYL 438
           ******************************************************************************************* PP
   S: 274  alspdgeaivtaagDetlrfwklfdkkka 302
           a+spdg++ivt+agDetlrfw++f + k+
   Q: 439  AMSPDGQTIVTGAGDETLRFWNVFPSMKT 467
           ************************87665 PP

UBD/Beta-Prp

   S: 11   svitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdls.tgkcvhtlkghedsvlsl 100
           + ++++++++++s++  g   g ++vwd t+ k +r++ gh+  ++ + ++++  +l++gs+Dr+i   dl+ +++ v++l gh+++v+ l
   Q: 220  DSVCSLQWTREGSYISIGTHLGQVQVWDGTQCKRVRTMGGHQTRTSVLAWNSR--TLASGSRDRNILQHDLRvSSDHVSKLIGHKSEVCGL 308
           56778************************************************..8***************9999**************** PP
   S: 101  sfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsG..slDrtvrlWdlktgkllrtltgghtdsvyslsf 188
           ++s ++  l+sG++d+ + vw+ +++  +  tl++h+++v  ++++p +  ll+sG  ++Dr++r+W+  +g  l +      ++v  l++
   Q: 309  KWSHDDRELASGGNDNQLLVWNQHSQLPVL-TLTEHTAAVKAIAWSPHQsGLLASGggTADRCIRFWNTTNGHQLNHVD--TGSQVCNLAW 396
           ******************************.******************9****973369****************995..589******* PP
   S: 189  dsngkelvs..gsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdl 251
           ++n +elvs  g   +++ +w + + + v tl gh+  v+ +++sp+++ +v+g+ D+++r+W++
   Q: 397  SKNVNELVSthGYSQNQIMVWKYPSLSKVATLVGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNV 461
           ********977889*************************************************75 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDSTPRRKSG LNLPSGMNET SLRLETFSSS SSFRAVTCVS SPRAISSLSS PSKTSSCSDR 60
FIPCRSSSRL QTFGLIEKGS PVKEGGNEAY ARLLKSELFG SDFGSFSSPA GGQGGLGSPS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATTCTA CACCAAGAAG AAAGAGTGGC CTCAACCTCC CATCTGGGAT GAATGAGACT 60
TCTTTAAGAC TGGAGACCTT TTCTTCTTCA AGTTCTTTTA GAGCAGTCAC ATGCGTATCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR033010--Cdc20/Fizzy
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0097027--F:ubiquitin-protein transferase activator activity
GO:1904668--P:positive regulation of ubiquitin protein ligase activity

KEGG

pop:POPTR_0010s20960g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003035	Amborella trichopoda	70.26	0.00e+00	667.00
IUUC-Bdi-015033	Brachypodium distachyon	70.49	1.00e-177	615.00
IUUC-Cel-018472	Caenorhabditis elegans	57.58	1.00e-117	416.00
IUUC-Meu-056276	Macropus eugenii	51.94	5.00e-116	410.00
IUUC-Mtr-057760	Medicago truncatula	79.47	0.00e+00	736.00
IUUC-Mac-064942	Musa acuminata	73.29	0.00e+00	698.00
IUUC-Ppa-095366	Physcomitrella patens	61.68	3.00e-175	607.00
IUUC-Pgr-103466	Puccinia graminis	49.46	1.00e-106	380.00
IUUC-Ptt-103888	Puccinia triticina	55.49	2.00e-94	339.00
IUUC-Sha-106538	Sarcophilus harrisii	51.16	2.00e-118	418.00
IUUC-Sja-107900	Schizosaccharomyces japonicus	47.58	4.00e-112	397.00
IUUC-Spo-108369	Schizosaccharomyces pombe	54.13	4.00e-105	374.00
IUUC-Sit-110550	Setaria italica	68.24	0.00e+00	648.00
IUUC-Sbi-114386	Sorghum bicolor	74.65	0.00e+00	639.00
IUUC-Sre-115222	Sporisorium reilianum	55.06	4.00e-116	411.00
IUUC-Tae-123028	Triticum aestivum	71.46	0.00e+00	629.00
IUUC-Uma-129555	Ustilago maydis	56.72	3.00e-117	415.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence