iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099419

Ensembl Protein ID

POPTR_0015s04250.1

UniProt Accession

A9P926; A9P926_POPTR

Genbank Protein ID

ABK92879.1; EEF05632.1

Protein Name

GTP-binding protein beta chain

Genbank Nucleotide ID

EF144649; CM000351

Gene Name

POPTRDRAFT_574969; POPTR_0015s04250g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0015s04250	POPTR_0015s04250.1	POPTR_0015s04250.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.80e-47	157.7	149	185
UBD/Beta-Prp	1.30e-54	186.5	11	161

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd..tllvsGsdDgtikvWDlrtgv 34
           Htd+v+c++f  ++  +++vs+s+D+t+kvW+l+ ++
   Q: 149  HTDWVSCVRFspNTlqPTIVSASWDKTVKVWNLTNCK 185
           ***********6445677**************99876 PP

UBD/Beta-Prp

   S: 89   tlkghedsvlslsfsp.sgdklvsGshdrtirvwdletgqclee....tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrt 174
           t+++h+d+v++++    ++d +vs s+d+ i +w l ++++ +      l+gh+++v+ vv+++dg+   sGs D+ +rlWdl+tg   r+
   Q: 11   TMRAHTDQVTAIATPIdNSDMIVSSSRDKSIILWSLTKDEKTYGvarrRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGVSARR 101
           5667777777777665455777777777777777777777766666677777777777777777777777777777777777777777777 PP
   S: 175  ltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec...vrtlnghtdnvksvrfspn 233
           + g ht++v s++f+ + +++vs+s+d+t+klw+   gec   +++ + htd+v++vrfspn
   Q: 102  FVG-HTKDVLSVAFSIDNRQIVSASRDKTIKLWNT-LGECkytIQEAESHTDWVSCVRFSPN 161
           776.7777777777777777777777777777777.44454446666667777777777765 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MASDTLVLRG TMRAHTDQVT AIATPIDNSD MIVSSSRDKS IILWSLTKDE KTYGVARRRL 60
TGHSHFVQDV VLSSDGQFAL SGSWDGELRL WDLATGVSAR RFVGHTKDVL SVAFSIDNRQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCTTCCTCGC TGCCTCTCTT GCTCAAAAAC CCTAGAAAAC AGCAGCAGCA GCTCTTGTTC 60
TTCTCTGTTC CAGCCATGGC CTCCGATACC CTCGTTCTTC GCGGCACCAT GAGAGCTCAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG

pop:POPTR_0015s04250g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000395	Aegilops tauschii	73.63	3.00e-124	437.00
IUUC-Eca-033296	Equus caballus	73.15	2.00e-63	233.00
IUUC-Hvu-047641	Hordeum vulgare	69.82	4.00e-136	476.00
IUUC-Lpe-050762	Leersia perrieri	70.09	4.00e-137	480.00
IUUC-Oba-075981	Oryza barthii	66.17	6.00e-124	436.00
IUUC-Obr-076099	Oryza brachyantha	67.93	5.00e-133	466.00
IUUC-Ogl-077181	Oryza glaberrima	70.59	1.00e-137	481.00
IUUC-Ogu-078035	Oryza glumaepatula	70.59	1.00e-137	481.00
IUUC-Oin-079327	Oryza indica	70.59	1.00e-137	481.00
IUUC-Olo-081084	Oryza longistaminata	70.59	1.00e-137	481.00
IUUC-Ome-081612	Oryza meridionalis	70.59	1.00e-137	481.00
IUUC-Oni-082682	Oryza nivara	68.51	3.00e-134	470.00
IUUC-Opu-083308	Oryza punctata	70.59	2.00e-137	481.00
IUUC-Oru-084200	Oryza rufipogon	70.59	1.00e-137	481.00
IUUC-Osa-085488	Oryza sativa	70.59	1.00e-137	481.00
IUUC-Pno-095100	Phaeosphaeria nodorum	64.15	5.00e-81	293.00
IUUC-Sit-110060	Setaria italica	70.59	7.00e-138	482.00
IUUC-Sbi-114610	Sorghum bicolor	70.59	1.00e-137	482.00
IUUC-Tgu-117340	Taeniopygia guttata	31.76	4.00e-36	144.00
IUUC-Tni-120260	Tetraodon nigroviridis	65.33	2.00e-126	444.00
IUUC-Tae-125589	Triticum aestivum	69.82	6.00e-136	476.00
IUUC-Tur-126335	Triticum urartu	74.37	2.00e-120	424.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence