iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ogl-077401

UUCD1 version

UUC-OrG-02000

Ensembl Protein ID

ORGLA01G0270900.1

UniProt Accession

I1NS69; I1NS69_ORYGL

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ORGLA01G0270900	ORGLA01G0270900.1	ORGLA01G0270900.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.10e-35	119.8	142	180
UBD/Beta-Prp	4.50e-70	236.8	12	186

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH + ++ ++f +d + +v+G+ D+ +kvWDl+ g+ll+
   Q: 142  GHRGAIRTIRFtPDgRWVVTGGEDNIVKVWDLTAGKLLH 180
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 89   tlkghedsvlslsfsp.sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltggh 179
            + +h+++v+sls+ + s+ ++++G++dr +++w + +++ l   lsgh+g+v  v+++  + l+ +Gs ++ ++lWdl+ +k++r ltg h
   Q: 12   EFVAHDAEVRSLSIGKkSSRVFITGGSDRKVNLWAIGKQTPLL-SLSGHTGSVEAVEFDTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTG-H 101
           5678************666************************.*********************************************9.* PP
   S: 180  tdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn 264
            +s +s++f++ g++++sgs d+++k+wd++++ c++t++gh+  ++ +rf+p++ ++v+g++D+ +++Wdl+ g+ll+ ++ h 
   Q: 102  RSSCTSVEFHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDFKFHS 186
           *******************************************************************************998775 PP

Organism

Oryza glaberrima

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MDPEKRGYRL QEFVAHDAEV RSLSIGKKSS RVFITGGSDR KVNLWAIGKQ TPLLSLSGHT 60
GSVEAVEFDT AEVLVLAGSS NGSIKLWDLE EAKVVRSLTG HRSSCTSVEF HPFGEFFASG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACCCCG AGAAGCGCGG CTACAGGCTC CGTATCCTTT TTTTTTTTTT GCTGCTACTG 60
CGTCGTTGGG TTGCCCTTCT GTTTGCCCGG TTCTTGATCC GATTTGGCTC GGAGGAGGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	67.66	0.00e+00	1150.00
IUUC-Ath-006624	Arabidopsis thaliana	68.19	8.00e-153	533.00
IUUC-Bdi-014531	Brachypodium distachyon	79.11	0.00e+00	1337.00
IUUC-Bra-017265	Brassica rapa	68.68	1.00e-149	523.00
IUUC-Gma-043341	Glycine max	45.85	0.00e+00	695.00
IUUC-Hvu-047729	Hordeum vulgare	76.31	0.00e+00	959.00
IUUC-Mac-065245	Musa acuminata	56.22	0.00e+00	637.00
IUUC-Oba-075016	Oryza barthii	95.53	0.00e+00	1437.00
IUUC-Obr-076138	Oryza brachyantha	90.94	0.00e+00	1554.00
IUUC-Ogu-078062	Oryza glumaepatula	93.88	0.00e+00	1594.00
IUUC-Oin-080042	Oryza indica	93.65	0.00e+00	1592.00
IUUC-Olo-080713	Oryza longistaminata	97.88	0.00e+00	1461.00
IUUC-Ome-081192	Oryza meridionalis	93.70	0.00e+00	1362.00
IUUC-Oni-082473	Oryza nivara	93.52	0.00e+00	1580.00
IUUC-Opu-083293	Oryza punctata	87.71	0.00e+00	1439.00
IUUC-Oru-085183	Oryza rufipogon	93.53	0.00e+00	1589.00
IUUC-Osa-085801	Oryza sativa	99.64	0.00e+00	1697.00
IUUC-Sit-110364	Setaria italica	80.36	0.00e+00	1291.00
IUUC-Sbi-114389	Sorghum bicolor	72.73	0.00e+00	1217.00
IUUC-Tca-121590	Theobroma cacao	73.75	3.00e-147	514.00
IUUC-Tae-125511	Triticum aestivum	78.12	0.00e+00	1308.00
IUUC-Tur-126181	Triticum urartu	72.80	0.00e+00	1222.00
IUUC-Tbe-128071	Tupaia belangeri	31.22	6.00e-32	130.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence