iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114046

Ensembl Protein ID

Sb04g036910.1

UniProt Accession

C5XVA2; C5XVA2_SORBI

Genbank Protein ID

EES07740.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G341700

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g036910	Sb04g036910.1	Sb04g036910.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-24	86.4	691	728
UBD/Beta-Prp	8.00e-44	150.8	519	682

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+ +v ++++ ++  +++s s D  +kvW++++g +++
   Q: 691  GHNTDVQSVCWdNNgEYIASVSQD-LVKVWSISSGECIH 728
           79999******9777*********.9**********987 PP

UBD/Beta-Prp

   S: 87   vhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl.ktgkllrtltgghtd 181
           v  ++  ++++++++fs +g+ l+s++h +   +w++e+ q  + t ++h  +++ v++ p+++ l+++s Drt++lW+    g+ l+t+tg h +
   Q: 519  VNCWRTSNSKIVCCHFSSDGKILASAGHEKKTVLWNMENFQTQY-TPEEHGLIITDVRFRPNSSQLATSSFDRTIKLWNAaDPGFSLHTFTG-HSG 612
           55677889************************************.**********************************96779*******9.*** PP
   S: 182  svyslsfdsngke.lvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrs 253
           +v+sl+f++++++ l s++  g +++w+  + +c+r+ +g +++v+   f p+   ++ ++++++++i+d+++
   Q: 613  QVTSLDFHPKKTDlLCSCDGSGEIRYWNATQLTCLRAIKGGSAQVR---FQPHVGQFLAAAAENVVSIFDIET 682
           **********96615699999*******************999876...8888888888999********987 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MAQSNWEADK MLDVYIYDYL LKRNLQTTAK AFMAEGKVAA DPVAIDAPGG FLFEWWSVFW 60
DIFIARTNEK HSEVAAAYLE AQQIKAREHQ QQMQMQQLQL MQQRHAQLQR TNANHPSLNG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCTCTCTCT CCTCCCTCCC TCACTTTCTC TCTCATCTAC TACTAGTAGT AACTCCTCTC 60
CGCTTCTTCC GAAGCGGCGC GGGCGGAAGC GAGCTCACAC CACCGTAGCG CGCGCGCGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

SMART

SM00320--WD40

KEGG

sbi:SORBI_04g036910

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000776	Aegilops tauschii	82.70	0.00e+00	687.00
IUUC-Atr-002717	Amborella trichopoda	68.78	4.00e-161	561.00
IUUC-Aly-006471	Arabidopsis lyrata	65.06	1.00e-161	562.00
IUUC-Ath-007671	Arabidopsis thaliana	62.38	0.00e+00	898.00
IUUC-Bdi-014855	Brachypodium distachyon	88.93	0.00e+00	1322.00
IUUC-Bol-016419	Brassica oleracea	60.20	0.00e+00	900.00
IUUC-Bra-017537	Brassica rapa	59.43	0.00e+00	879.00
IUUC-Gma-044008	Glycine max	66.09	0.00e+00	962.00
IUUC-Hvu-047358	Hordeum vulgare	84.39	0.00e+00	732.00
IUUC-Lpe-051527	Leersia perrieri	85.18	0.00e+00	1273.00
IUUC-Mtr-058582	Medicago truncatula	64.36	0.00e+00	947.00
IUUC-Mac-064608	Musa acuminata	74.51	0.00e+00	1085.00
IUUC-Oba-075243	Oryza barthii	81.99	0.00e+00	1263.00
IUUC-Obr-076847	Oryza brachyantha	84.74	0.00e+00	1254.00
IUUC-Ogl-076931	Oryza glaberrima	88.20	0.00e+00	1337.00
IUUC-Ogu-077963	Oryza glumaepatula	83.73	0.00e+00	1264.00
IUUC-Oin-079144	Oryza indica	87.70	0.00e+00	1327.00
IUUC-Olo-080947	Oryza longistaminata	79.38	0.00e+00	1199.00
IUUC-Ome-081723	Oryza meridionalis	83.81	0.00e+00	1265.00
IUUC-Oni-083067	Oryza nivara	87.70	0.00e+00	1327.00
IUUC-Opu-083429	Oryza punctata	89.69	0.00e+00	1333.00
IUUC-Oru-084534	Oryza rufipogon	83.23	0.00e+00	1264.00
IUUC-Osa-085788	Oryza sativa	88.07	0.00e+00	1335.00
IUUC-Ppa-095985	Physcomitrella patens	62.32	3.00e-147	513.00
IUUC-Pop-099951	Populus trichocarpa	65.19	0.00e+00	964.00
IUUC-Ppe-101896	Prunus persica	64.98	0.00e+00	929.00
IUUC-Smo-109593	Selaginella moellendorffii	50.52	0.00e+00	704.00
IUUC-Sit-110618	Setaria italica	93.54	0.00e+00	1371.00
IUUC-Sly-111127	Solanum lycopersicum	63.01	0.00e+00	909.00
IUUC-Stu-112404	Solanum tuberosum	63.46	0.00e+00	906.00
IUUC-Tca-121754	Theobroma cacao	63.24	0.00e+00	924.00
IUUC-Tae-125446	Triticum aestivum	86.93	0.00e+00	1287.00
IUUC-Tur-126636	Triticum urartu	79.25	0.00e+00	1187.00
IUUC-Vvi-130936	Vitis vinifera	65.31	0.00e+00	976.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence