iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Kpa-049323

Ensembl Protein ID

CAY67951

UniProt Accession

C4QXH8; C4QXH8_KOMPG

Genbank Protein ID

CAY67951.1

Protein Name

Essential conserved subunit of CPF (Cleavage and polyadenylation factor)

Genbank Nucleotide ID

FN392319

Gene Name

PAS_chr1-4_0122

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PAS_chr1-4_0122	CAY67951	CAY67951

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.20e-10	37.7	262	333

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlp.sGitydrssIekwlasggktcPvtrqpl.teedlvPnltlrrliqawceenss 74
            +++pI+++l + Pv +p +   y ++sIe+ l ++  +cP ++q+    ++l+P   l++ i++++++ns+
   Q: 262  RMIDPITKDLIKYPVLTPcCKKLYGKESIEEELLNDDFKCPNCGQEDiLLDSLIPDDDLKKQIDEFVKSNSQ 333
           689***************9***********999777777****99855999*****************9986 PP

Organism

Komagataella pastoris

Protein Sequence
(Fasta)

MSSTIFYRFR SQKDLSRVQF DGTGITVFDL KREIILQNKL NSNLDFVLTL LHSDTNEPYD 60
DDNTVIPRSS SVIARRSPPM KKGRGTAGRY LVGKPRINRT APSGPTTGAP APTNLTGLSE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCCAGTA CCATTTTTTA TCGGTTCAGG TCCCAGAAAG ACCTGTCTAG AGTTCAGTTT 60
GATGGTACAG GAATTACTGT ATTTGATTTG AAACGTGAAA TTATCCTTCA AAACAAGCTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR014891--DWNN_domain
IPR003613--Ubox_domain
IPR025829--Zn_knuckle_CX2CX3GHX4C
IPR001878--Znf_CCHC
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51282--DWNN
PS51698--U_BOX
PS50158--ZF_CCHC

Pfam

PF08783--DWNN
PF04564--U-box
PF13696--zf-CCHC_2

SMART

SM01180--DWNN
SM00504--Ubox
SM00343--ZnF_C2HC

Gene Ontology

GO:0005829--C:cytosol
GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0036002--F:pre-mRNA binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006378--P:mRNA polyadenylation
GO:0098789--P:pre-mRNA cleavage required for polyadenylation

KEGG

ppa:PAS_chr1-4_0122

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000195	Aegilops tauschii	29.14	6.00e-14	70.90
IUUC-Aml-001655	Ailuropoda melanoleuca	30.86	2.00e-39	156.00
IUUC-Atr-002768	Amborella trichopoda	31.11	3.00e-16	78.20
IUUC-Apl-004100	Anas platyrhynchos	30.42	3.00e-29	122.00
IUUC-Aca-004345	Anolis carolinensis	31.35	8.00e-24	103.00
IUUC-Aly-006444	Arabidopsis lyrata	30.39	2.00e-19	89.00
IUUC-Ath-007648	Arabidopsis thaliana	30.39	4.00e-19	88.20
IUUC-Ago-007949	Ashbya gossypii	48.02	2.00e-86	310.00
IUUC-Acl-008118	Aspergillus clavatus	40.32	6.00e-55	206.00
IUUC-Afl-008408	Aspergillus flavus	35.88	2.00e-27	114.00
IUUC-Afu-008777	Aspergillus fumigatus	39.40	5.00e-63	233.00
IUUC-Ani-009426	Aspergillus nidulans	39.58	1.00e-68	251.00
IUUC-Ang-009735	Aspergillus niger	39.62	1.00e-64	238.00
IUUC-Aor-010213	Aspergillus oryzae	40.39	8.00e-64	236.00
IUUC-Ate-010474	Aspergillus terreus	39.68	5.00e-59	219.00
IUUC-Ame-010679	Astyanax mexicanus	31.38	5.00e-40	158.00
IUUC-Bgr-012229	Blumeria graminis	42.81	8.00e-69	252.00
IUUC-Bta-012672	Bos taurus	30.56	8.00e-39	154.00
IUUC-Bci-013880	Botrytis cinerea	41.50	4.00e-68	250.00
IUUC-Bdi-014276	Brachypodium distachyon	29.14	3.00e-14	72.00
IUUC-Bol-015602	Brassica oleracea	32.20	3.00e-18	85.50
IUUC-Bra-016670	Brassica rapa	32.20	3.00e-18	85.50
IUUC-Cel-018532	Caenorhabditis elegans	30.21	2.00e-28	119.00
IUUC-Cja-018843	Callithrix jacchus	31.33	7.00e-32	131.00
IUUC-Cfa-021107	Canis familiaris	31.87	2.00e-39	156.00
IUUC-Cre-022712	Chlamydomonas reinhardtii	35.53	9.00e-08	49.70
IUUC-Csa-023397	Chlorocebus sabaeus	31.87	9.00e-40	157.00
IUUC-Cho-024327	Choloepus hoffmanni	30.27	5.00e-37	148.00
IUUC-Cin-025439	Ciona intestinalis	25.56	2.00e-10	57.00
IUUC-Csv-026162	Ciona savignyi	28.31	2.00e-11	60.10
IUUC-Cgl-026629	Colletotrichum gloeosporioides	40.79	2.00e-60	224.00
IUUC-Cne-026921	Cryptococcus neoformans	35.31	6.00e-58	216.00
IUUC-Cme-027244	Cyanidioschyzon merolae	42.68	2.00e-14	72.40
IUUC-Dre-028023	Danio rerio	31.47	7.00e-38	151.00
IUUC-Dno-029430	Dasypus novemcinctus	33.75	3.00e-29	122.00
IUUC-Dor-030406	Dipodomys ordii	31.99	3.00e-26	112.00
IUUC-Dse-031312	Dothistroma septosporum	35.51	1.00e-55	209.00
IUUC-Dme-032133	Drosophila melanogaster	25.76	3.00e-24	105.00
IUUC-Ete-032466	Echinops telfairi	30.81	1.00e-18	87.80
IUUC-Eca-033447	Equus caballus	30.77	1.00e-39	154.00
IUUC-Eeu-034677	Erinaceus europaeus	30.25	4.00e-29	122.00
IUUC-Fca-035439	Felis catus	30.86	2.00e-39	156.00
IUUC-Fal-037230	Ficedula albicollis	29.91	1.00e-36	147.00
IUUC-Fox-037976	Fusarium oxysporum	39.89	7.00e-72	262.00
IUUC-Fso-038202	Fusarium solani	39.06	1.00e-69	255.00
IUUC-Gmo-039390	Gadus morhua	29.13	2.00e-23	100.00
IUUC-Ggr-040035	Gaeumannomyces graminis	41.23	7.00e-67	246.00
IUUC-Gga-040908	Gallus gallus	30.86	3.00e-38	152.00
IUUC-Gac-041718	Gasterosteus aculeatus	28.91	2.00e-22	97.10
IUUC-Gma-044202	Glycine max	28.88	1.00e-18	86.30
IUUC-Ggo-044567	Gorilla gorilla	31.87	1.00e-40	160.00
IUUC-Hsa-046849	Homo sapiens	31.87	1.00e-39	157.00
IUUC-Hvu-047515	Hordeum vulgare	42.42	5.00e-12	62.80
IUUC-Itr-048832	Ictidomys tridecemlineatus	31.87	3.00e-39	155.00
IUUC-Lch-050524	Latimeria chalumnae	31.29	2.00e-38	153.00
IUUC-Lpe-050947	Leersia perrieri	29.89	9.00e-14	70.50
IUUC-Loc-052709	Lepisosteus oculatus	32.94	6.00e-40	158.00
IUUC-Lma-053186	Leptosphaeria maculans	39.23	5.00e-60	223.00
IUUC-Laf-054472	Loxodonta africana	31.87	3.00e-39	156.00
IUUC-Mcc-055743	Macaca mulatta	31.87	8.00e-40	157.00
IUUC-Meu-056399	Macropus eugenii	31.91	4.00e-20	92.40
IUUC-Mor-057073	Magnaporthe oryzae	40.35	3.00e-66	244.00
IUUC-Mpo-057378	Magnaporthe poae	41.40	2.00e-68	251.00
IUUC-Mtr-058761	Medicago truncatula	27.81	5.00e-15	74.30
IUUC-Mla-058840	Melampsora laricipopulina	36.16	3.00e-28	118.00
IUUC-Mga-060129	Meleagris gallopavo	30.42	1.00e-28	120.00
IUUC-Mvi-060424	Microbotryum violaceum	35.26	4.00e-31	127.00
IUUC-Mmr-061295	Microcebus murinus	32.16	2.00e-40	159.00
IUUC-Mdo-061976	Monodelphis domestica	31.25	5.00e-20	88.60
IUUC-Mmu-064009	Mus musculus	31.78	2.00e-38	152.00
IUUC-Mac-064855	Musa acuminata	30.05	3.00e-18	85.10
IUUC-Mpu-065875	Mustela putorius furo	31.87	2.00e-39	156.00
IUUC-Mlu-066941	Myotis lucifugus	30.56	5.00e-39	155.00
IUUC-Nfi-068518	Neosartorya fischeri	39.19	6.00e-63	233.00
IUUC-Ncr-068886	Neurospora crassa	38.24	4.00e-67	246.00
IUUC-Nle-069717	Nomascus leucogenys	31.87	8.00e-40	157.00
IUUC-Opr-070280	Ochotona princeps	31.56	1.00e-35	144.00
IUUC-Ont-071462	Oreochromis niloticus	30.29	1.00e-36	147.00
IUUC-Oan-073300	Ornithorhynchus anatinus	28.09	4.00e-33	135.00
IUUC-Ocu-074124	Oryctolagus cuniculus	30.86	2.00e-39	156.00
IUUC-Oba-075756	Oryza barthii	29.31	9.00e-14	70.10
IUUC-Obr-076580	Oryza brachyantha	30.29	4.00e-16	77.80
IUUC-Ogl-077759	Oryza glaberrima	29.71	5.00e-16	77.80
IUUC-Ogu-078657	Oryza glumaepatula	29.31	1.00e-13	70.10
IUUC-Oin-079481	Oryza indica	27.95	7.00e-10	57.40
IUUC-Olo-081062	Oryza longistaminata	28.72	2.00e-16	79.00
IUUC-Ome-081813	Oryza meridionalis	29.31	9.00e-14	70.10
IUUC-Oni-083007	Oryza nivara	29.31	1.00e-13	70.10
IUUC-Opu-083385	Oryza punctata	29.31	1.00e-13	69.70
IUUC-Oru-084861	Oryza rufipogon	29.31	1.00e-13	69.70
IUUC-Osa-085896	Oryza sativa	29.71	4.00e-16	77.00
IUUC-Ola-086693	Oryzias latipes	29.62	3.00e-30	124.00
IUUC-Olu-087631	Ostreococcus lucimarinus	36.36	5.00e-10	53.10
IUUC-Oga-088262	Otolemur garnettii	31.87	2.00e-39	156.00
IUUC-Oar-089658	Ovis aries	31.58	7.00e-39	154.00
IUUC-Ptr-091311	Pan troglodytes	31.47	3.00e-41	162.00
IUUC-Pan-091925	Papio anubis	31.87	2.00e-39	156.00
IUUC-Psi-093605	Pelodiscus sinensis	29.93	1.00e-25	110.00
IUUC-Pma-094163	Petromyzon marinus	30.58	3.00e-23	99.80
IUUC-Pno-094790	Phaeosphaeria nodorum	38.18	3.00e-53	200.00
IUUC-Ppa-095943	Physcomitrella patens	24.19	2.00e-25	109.00
IUUC-Pfo-096581	Poecilia formosa	29.41	1.00e-33	136.00
IUUC-Pab-098229	Pongo abelii	31.87	1.00e-39	157.00
IUUC-Pop-099127	Populus trichocarpa	34.29	1.00e-21	95.50
IUUC-Pca-100875	Procavia capensis	27.70	1.00e-10	61.20
IUUC-Ppe-101658	Prunus persica	30.06	2.00e-13	68.90
IUUC-Pva-102343	Pteropus vampyrus	30.99	2.00e-38	153.00
IUUC-Pgr-103275	Puccinia graminis	50.55	5.00e-25	107.00
IUUC-Ptt-104004	Puccinia triticina	41.33	1.00e-13	68.90
IUUC-Pte-104161	Pyrenophora teres	37.99	2.00e-53	201.00
IUUC-Pyt-104576	Pyrenophora triticirepentis	38.74	1.00e-55	208.00
IUUC-Rno-105264	Rattus norvegicus	31.78	2.00e-38	153.00
IUUC-Sce-106138	Saccharomyces cerevisiae	46.01	3.00e-83	299.00
IUUC-Sha-107497	Sarcophilus harrisii	31.29	2.00e-38	153.00
IUUC-Sja-107991	Schizosaccharomyces japonicus	41.87	1.00e-77	281.00
IUUC-Spo-108257	Schizosaccharomyces pombe	42.59	1.00e-79	288.00
IUUC-Ssl-108581	Sclerotinia sclerotiorum	41.78	4.00e-73	266.00
IUUC-Smo-109358	Selaginella moellendorffii	33.87	2.00e-21	94.70
IUUC-Sit-109920	Setaria italica	30.29	3.00e-17	82.00
IUUC-Sly-111616	Solanum lycopersicum	30.94	6.00e-19	87.40
IUUC-Stu-112014	Solanum tuberosum	22.73	2.00e-12	64.30
IUUC-Sar-113120	Sorex araneus	31.75	4.00e-27	115.00
IUUC-Sbi-113881	Sorghum bicolor	30.86	1.00e-17	82.80
IUUC-Sre-115127	Sporisorium reilianum	35.28	4.00e-61	226.00
IUUC-Ssc-116147	Sus scrofa	31.87	1.00e-39	157.00
IUUC-Tgu-117215	Taeniopygia guttata	30.42	4.00e-28	119.00
IUUC-Tru-118525	Takifugu rubripes	28.11	2.00e-33	134.00
IUUC-Tsy-119160	Tarsius syrichta	31.87	2.00e-39	156.00
IUUC-Tni-119816	Tetraodon nigroviridis	28.64	4.00e-22	95.90
IUUC-Tca-121727	Theobroma cacao	30.64	9.00e-15	73.60
IUUC-Tre-122181	Trichoderma reesei	40.18	5.00e-67	246.00
IUUC-Tvi-122316	Trichoderma virens	39.18	4.00e-65	240.00
IUUC-Tae-125622	Triticum aestivum	29.14	4.00e-14	71.20
IUUC-Tur-126827	Triticum urartu	29.65	5.00e-15	74.30
IUUC-Tme-126984	Tuber melanosporum	43.57	3.00e-83	300.00
IUUC-Tbe-127263	Tupaia belangeri	43.06	3.00e-10	59.70
IUUC-Ttr-128498	Tursiops truncatus	31.29	1.00e-38	154.00
IUUC-Uma-129457	Ustilago maydis	35.48	1.00e-61	228.00
IUUC-Vda-129986	Verticillium dahliae	40.05	2.00e-71	261.00
IUUC-Vpa-130795	Vicugna pacos	31.06	7.00e-25	108.00
IUUC-Vvi-131146	Vitis vinifera	31.40	1.00e-14	73.60
IUUC-Xtr-132789	Xenopus tropicalis	29.91	9.00e-36	144.00
IUUC-Xma-133011	Xiphophorus maculatus	28.28	5.00e-33	134.00
IUUC-Yli-134516	Yarrowia lipolytica	43.27	1.00e-72	265.00
IUUC-Zma-134699	Zea mays	30.29	1.00e-16	80.10

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence