iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Xtr-132141

Ensembl Protein ID

ENSXETP00000028515.3

UniProt Accession

F6QPI7; F6QPI7_XENTR

Genbank Protein ID

ENSXETP00000028515

Protein Name

Chromatin assembly factor 1 subunit B

Genbank Nucleotide ID

AAMC01124450

Gene Name

chaf1b

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSXETG00000013014.3	ENSXETT00000028515.3	ENSXETP00000028515.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-19	68.7	126	162

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gH ++v+++++ +d +++vs+s D+t  +WD+++g +
   Q: 126  GHLEDVYDICWtQDsNFMVSASVDNTAIMWDVTKGQK 162
           89**********888******************9976 PP

Organism

Xenopus tropicalis

Protein Sequence
(Fasta)

MKVITCEIAW HNKEPVYSLD FQHGTDRINR MASAGVDTAV RMWKIEKSPE GKAIVEFVAS 60
LARHTKAVNV VRFSPNGEIL ASGGDDAAIV LWKLNEAKEP EATPFQEQDE PELNKENWTV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGACGTAGA GCAGAGAGCG GATCGCTTCC CCGGGCAGGT AATTCCGTGT GTTTGTGTGC 60
AAGCTTCTTA TTTAACCCGT GTATGCACTA CAACTCCCAC AATCCTGTCA GACACAGCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR029129--CAF1_p60_C
IPR001632--Gprotein_B
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF15512--CAF-1_p60_C
PF00400--WD40

PRINTS

PR00319--GPROTEINB

SMART

SM00320--WD40

Gene Ontology

GO:0033186--C:CAF-1 complex
GO:0005634--C:nucleus
GO:0042393--F:histone binding
GO:0048568--P:embryonic organ development
GO:0000278--P:mitotic cell cycle
GO:0006334--P:nucleosome assembly
GO:0060041--P:retina development in camera-type eye

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000474	Aegilops tauschii	41.04	7.00e-85	307.00
IUUC-Aml-001755	Ailuropoda melanoleuca	76.09	0.00e+00	697.00
IUUC-Atr-002674	Amborella trichopoda	38.62	1.00e-85	310.00
IUUC-Apl-003701	Anas platyrhynchos	72.79	0.00e+00	695.00
IUUC-Aca-004692	Anolis carolinensis	73.35	0.00e+00	712.00
IUUC-Aly-006286	Arabidopsis lyrata	37.25	3.00e-86	312.00
IUUC-Ath-007683	Arabidopsis thaliana	39.13	4.00e-86	311.00
IUUC-Ago-007940	Ashbya gossypii	31.34	4.00e-62	232.00
IUUC-Acl-008070	Aspergillus clavatus	39.71	3.00e-42	166.00
IUUC-Afl-008414	Aspergillus flavus	39.23	7.00e-42	165.00
IUUC-Ani-009399	Aspergillus nidulans	41.18	4.00e-41	162.00
IUUC-Ang-009650	Aspergillus niger	38.21	2.00e-39	157.00
IUUC-Aor-009937	Aspergillus oryzae	39.23	6.00e-42	165.00
IUUC-Ate-010505	Aspergillus terreus	33.33	8.00e-27	114.00
IUUC-Ame-011094	Astyanax mexicanus	71.05	0.00e+00	640.00
IUUC-Bgr-012005	Blumeria graminis	39.15	7.00e-38	152.00
IUUC-Bta-013423	Bos taurus	76.48	0.00e+00	706.00
IUUC-Bci-013847	Botrytis cinerea	41.87	5.00e-41	162.00
IUUC-Bdi-014860	Brachypodium distachyon	42.68	8.00e-84	304.00
IUUC-Bol-016603	Brassica oleracea	38.10	6.00e-83	301.00
IUUC-Bra-017175	Brassica rapa	39.11	4.00e-80	291.00
IUUC-Cel-018272	Caenorhabditis elegans	33.41	3.00e-57	215.00
IUUC-Cja-019558	Callithrix jacchus	77.07	0.00e+00	691.00
IUUC-Cfa-020900	Canis familiaris	76.42	0.00e+00	698.00
IUUC-Cpo-022054	Cavia porcellus	68.31	0.00e+00	629.00
IUUC-Csa-023850	Chlorocebus sabaeus	76.03	0.00e+00	702.00
IUUC-Cho-024510	Choloepus hoffmanni	69.90	2.00e-120	425.00
IUUC-Cin-025178	Ciona intestinalis	45.36	3.00e-102	365.00
IUUC-Cgl-026572	Colletotrichum gloeosporioides	40.22	3.00e-37	149.00
IUUC-Cne-027015	Cryptococcus neoformans	34.51	1.00e-36	148.00
IUUC-Cme-027136	Cyanidioschyzon merolae	29.20	2.00e-55	209.00
IUUC-Dre-027879	Danio rerio	66.08	0.00e+00	639.00
IUUC-Dno-029335	Dasypus novemcinctus	76.42	0.00e+00	712.00
IUUC-Dor-030520	Dipodomys ordii	59.72	3.00e-144	505.00
IUUC-Dse-031566	Dothistroma septosporum	35.85	5.00e-38	152.00
IUUC-Dme-031838	Drosophila melanogaster	43.85	2.00e-111	396.00
IUUC-Eca-033563	Equus caballus	71.43	0.00e+00	714.00
IUUC-Fca-036052	Felis catus	78.49	0.00e+00	704.00
IUUC-Fal-037080	Ficedula albicollis	71.34	0.00e+00	701.00
IUUC-Fox-038022	Fusarium oxysporum	37.50	3.00e-40	159.00
IUUC-Fso-038115	Fusarium solani	37.50	3.00e-39	156.00
IUUC-Gmo-039461	Gadus morhua	72.26	9.00e-140	489.00
IUUC-Ggr-040100	Gaeumannomyces graminis	38.89	1.00e-39	158.00
IUUC-Gga-041133	Gallus gallus	72.41	0.00e+00	697.00
IUUC-Gac-041769	Gasterosteus aculeatus	68.41	0.00e+00	634.00
IUUC-Gma-043070	Glycine max	39.95	7.00e-93	334.00
IUUC-Ggo-044561	Gorilla gorilla	75.51	0.00e+00	696.00
IUUC-Hsa-046150	Homo sapiens	75.74	0.00e+00	699.00
IUUC-Hvu-047792	Hordeum vulgare	39.79	3.00e-54	204.00
IUUC-Itr-048630	Ictidomys tridecemlineatus	76.83	0.00e+00	697.00
IUUC-Kpa-049397	Komagataella pastoris	36.59	2.00e-80	292.00
IUUC-Lch-050365	Latimeria chalumnae	51.65	3.00e-132	464.00
IUUC-Lpe-050875	Leersia perrieri	40.80	2.00e-85	309.00
IUUC-Loc-052770	Lepisosteus oculatus	65.68	0.00e+00	639.00
IUUC-Laf-053505	Loxodonta africana	72.48	0.00e+00	716.00
IUUC-Mcc-054803	Macaca mulatta	76.03	0.00e+00	702.00
IUUC-Meu-056578	Macropus eugenii	62.82	3.00e-171	594.00
IUUC-Mor-057211	Magnaporthe oryzae	37.04	1.00e-37	151.00
IUUC-Mpo-057411	Magnaporthe poae	40.00	7.00e-39	155.00
IUUC-Mtr-058066	Medicago truncatula	40.30	5.00e-92	331.00
IUUC-Mga-059735	Meleagris gallopavo	71.49	0.00e+00	714.00
IUUC-Mvi-060288	Microbotryum violaceum	29.07	4.00e-28	120.00
IUUC-Mmr-061343	Microcebus murinus	71.64	0.00e+00	703.00
IUUC-Mdo-062065	Monodelphis domestica	77.01	0.00e+00	701.00
IUUC-Mmu-063501	Mus musculus	75.93	0.00e+00	704.00
IUUC-Mac-064864	Musa acuminata	39.31	2.00e-84	305.00
IUUC-Mpu-066549	Mustela putorius furo	74.60	0.00e+00	686.00
IUUC-Mlu-067121	Myotis lucifugus	75.46	0.00e+00	683.00
IUUC-Nfi-068462	Neosartorya fischeri	40.19	1.00e-42	167.00
IUUC-Ncr-068838	Neurospora crassa	39.91	5.00e-41	162.00
IUUC-Nle-069854	Nomascus leucogenys	75.68	0.00e+00	706.00
IUUC-Opr-070803	Ochotona princeps	67.11	4.00e-179	620.00
IUUC-Ont-071642	Oreochromis niloticus	72.98	0.00e+00	641.00
IUUC-Oan-073675	Ornithorhynchus anatinus	75.97	0.00e+00	698.00
IUUC-Ocu-073863	Oryctolagus cuniculus	79.12	0.00e+00	665.00
IUUC-Oba-075682	Oryza barthii	40.30	2.00e-80	292.00
IUUC-Obr-076039	Oryza brachyantha	41.29	3.00e-87	315.00
IUUC-Ogu-078021	Oryza glumaepatula	41.29	1.00e-85	310.00
IUUC-Oin-079908	Oryza indica	36.74	3.00e-66	246.00
IUUC-Olo-081063	Oryza longistaminata	41.29	1.00e-85	310.00
IUUC-Ome-081930	Oryza meridionalis	41.29	2.00e-85	309.00
IUUC-Oni-082547	Oryza nivara	41.29	1.00e-85	310.00
IUUC-Opu-084089	Oryza punctata	41.29	5.00e-84	305.00
IUUC-Oru-084844	Oryza rufipogon	41.29	1.00e-85	310.00
IUUC-Osa-085582	Oryza sativa	41.29	1.00e-85	310.00
IUUC-Ola-087187	Oryzias latipes	72.22	0.00e+00	633.00
IUUC-Olu-087792	Ostreococcus lucimarinus	39.22	5.00e-78	284.00
IUUC-Oga-088390	Otolemur garnettii	72.73	0.00e+00	691.00
IUUC-Oar-089740	Ovis aries	76.70	0.00e+00	673.00
IUUC-Ptr-091581	Pan troglodytes	75.80	0.00e+00	701.00
IUUC-Pan-092258	Papio anubis	69.21	0.00e+00	629.00
IUUC-Psi-093761	Pelodiscus sinensis	73.89	0.00e+00	723.00
IUUC-Ppa-095428	Physcomitrella patens	40.24	8.00e-92	331.00
IUUC-Pfo-097357	Poecilia formosa	72.47	0.00e+00	647.00
IUUC-Pab-098520	Pongo abelii	76.03	0.00e+00	703.00
IUUC-Pop-099331	Populus trichocarpa	39.25	9.00e-85	307.00
IUUC-Ppe-101548	Prunus persica	36.69	2.00e-86	312.00
IUUC-Pva-103243	Pteropus vampyrus	73.74	1.00e-178	619.00
IUUC-Pgr-103591	Puccinia graminis	31.73	6.00e-35	142.00
IUUC-Pte-104247	Pyrenophora teres	38.68	2.00e-39	157.00
IUUC-Pyt-104641	Pyrenophora triticirepentis	38.68	2.00e-39	157.00
IUUC-Rno-105202	Rattus norvegicus	76.62	0.00e+00	707.00
IUUC-Sce-106250	Saccharomyces cerevisiae	34.22	2.00e-70	259.00
IUUC-Sha-107036	Sarcophilus harrisii	72.06	0.00e+00	720.00
IUUC-Sja-107912	Schizosaccharomyces japonicus	35.90	6.00e-75	274.00
IUUC-Spo-108050	Schizosaccharomyces pombe	34.00	3.00e-75	275.00
IUUC-Ssl-108607	Sclerotinia sclerotiorum	38.17	1.00e-41	164.00
IUUC-Sit-109838	Setaria italica	42.26	5.00e-87	314.00
IUUC-Sly-110872	Solanum lycopersicum	40.40	6.00e-84	304.00
IUUC-Stu-111933	Solanum tuberosum	39.66	5.00e-81	294.00
IUUC-Sbi-114587	Sorghum bicolor	38.77	2.00e-88	319.00
IUUC-Ssc-115462	Sus scrofa	76.36	0.00e+00	707.00
IUUC-Tgu-117186	Taeniopygia guttata	75.28	0.00e+00	696.00
IUUC-Tru-118310	Takifugu rubripes	69.28	0.00e+00	654.00
IUUC-Tsy-118927	Tarsius syrichta	66.57	1.00e-136	479.00
IUUC-Tni-120832	Tetraodon nigroviridis	72.18	0.00e+00	639.00
IUUC-Tca-121584	Theobroma cacao	36.48	1.00e-89	323.00
IUUC-Tre-122140	Trichoderma reesei	37.78	5.00e-39	155.00
IUUC-Tvi-122663	Trichoderma virens	38.67	7.00e-40	158.00
IUUC-Tae-123476	Triticum aestivum	41.04	7.00e-85	307.00
IUUC-Tur-126239	Triticum urartu	41.04	4.00e-85	308.00
IUUC-Tme-127108	Tuber melanosporum	39.76	6.00e-80	291.00
IUUC-Ttr-129010	Tursiops truncatus	72.23	0.00e+00	691.00
IUUC-Vda-129825	Verticillium dahliae	39.05	1.00e-39	157.00
IUUC-Vpa-130374	Vicugna pacos	66.52	2.00e-84	306.00
IUUC-Vvi-131136	Vitis vinifera	39.41	1.00e-84	306.00
IUUC-Xma-133980	Xiphophorus maculatus	72.73	0.00e+00	648.00
IUUC-Yli-134457	Yarrowia lipolytica	38.29	2.00e-38	154.00
IUUC-Zma-135321	Zea mays	37.95	1.00e-87	317.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence