iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099347

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000346

Gene Name

POPTRDRAFT_565819; POPTR_0010s07660g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0010s07660	POPTR_0010s07660.1	POPTR_0010s07660.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.90e-16	60.0	1	68
E3 adaptor/Cullin RING/DCX/DWD	8.00e-28	96.4	264	294
UBD/Beta-Prp	9.10e-47	160.8	223	467

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 6    flCpIslelMrdPvvlp.sGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           ++C+Is+e++ +Pvv++ sGi y+++ Ie++++++gk cP+t++plt +d+vP  t + +  + +++ s
   Q: 1    MHCSISGEVPGEPVVSKrSGILYEKRLIERHISEYGK-CPITGEPLTMDDVVPVETGKIVKPRTVQTAS 68
           58***********************************.*********************9998888766 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWD 29
           gH+ +vt+++f  +  ++++Gs D+t++vW 
   Q: 264  GHSKKVTSVKFvGEgEFFLTGSADKTVRVWQ 294
           8**********96669**************6 PP

UBD/Beta-Prp

   S: 51   heaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletg...qcleetlsghdg 138
            ++++ +++++ +++i++tg+ D+t+ ++d  +g++ ++l+gh+++v+s++f  +g+++++Gs+d+t+rvw+ +++    c + +l+ h++
   Q: 223  SKPGILSIDIQYSKDIIATGGADATAVIFDRPSGQIASALSGHSKKVTSVKFVGEGEFFLTGSADKTVRVWQGSEDgnyDCRH-ILKDHTA 312
           567899999**9999*******************************************************9766541115555.******* PP
   S: 139  vvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl..tgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvks 227
            v+ v+vh ++n++v++slD+t  ++dl++g  l++   t+ +td  +s +f+++g  l +g     vk+wd++++  v +++gh  +v+ 
   Q: 313  EVQAVTVHATNNYFVTASLDNTWCFYDLSSGLRLTQVadTS-KTDGYTSAAFHPDGLILGTGTSEAVVKIWDVKSQANVAKFEGHVGPVTA 402
           ****************************9999999998666.999999******************************************* PP
   S: 228  vrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwkl 294
           + fs+n+ +l++++ + s+++Wdlr+ ++ +tl+l  +s ++   ++f+++  +lg + s+++++++
   Q: 403  ITFSENGYFLATAA-HDSVKLWDLRKLKNFRTLNLY-DSDTPTNSVEFDHSGSYLGISGSDIRVYQV 467
           ****8888888776.6699***************95.577777777999999999999999999987 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MHCSISGEVP GEPVVSKRSG ILYEKRLIER HISEYGKCPI TGEPLTMDDV VPVETGKIVK 60
PRTVQTASIP GMLGMFQNEW DGLMLSNFAL EQQLHTARQE LSHALYQHDA ACRVIARLKK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACAGTTCCCT GGCAACTGGC AACTGGCAAC TCAAGGCTCC TGCCTCTTGC TCGGCTGCTA 60
CTTAAATTTT ACCCTCAATA ATCATTAAAT TTAGATAGCT ACTTCGCAGC TAGTCCCCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR013915--Pre-mRNA_splic_Prp19
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08606--Prp19
PF04564--U-box
PF00400--WD40

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0000974--C:Prp19 complex
GO:0071006--C:U2-type catalytic step 1 spliceosome
GO:0004842--F:ubiquitin-protein transferase activity
GO:0000349--P:generation of catalytic spliceosome for first transesterification step

KEGG

pop:POPTR_0010s07660g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ago-007879	Ashbya gossypii	41.10	6.00e-26	111.00
IUUC-Ang-009746	Aspergillus niger	34.72	1.00e-67	249.00
IUUC-Aor-009905	Aspergillus oryzae	33.14	2.00e-67	249.00
IUUC-Cgl-026507	Colletotrichum gloeosporioides	33.14	4.00e-63	234.00
IUUC-Fox-037922	Fusarium oxysporum	32.64	9.00e-65	240.00
IUUC-Fso-038256	Fusarium solani	32.05	3.00e-67	248.00
IUUC-Ggr-039854	Gaeumannomyces graminis	33.27	5.00e-58	218.00
IUUC-Sja-107697	Schizosaccharomyces japonicus	31.94	9.00e-45	174.00
IUUC-Spo-108315	Schizosaccharomyces pombe	29.68	2.00e-44	172.00
IUUC-Tre-121920	Trichoderma reesei	32.99	2.00e-62	232.00
IUUC-Tvi-122294	Trichoderma virens	32.43	7.00e-54	204.00
IUUC-Tur-126664	Triticum urartu	65.55	0.00e+00	756.00
IUUC-Tme-127026	Tuber melanosporum	32.76	2.00e-67	249.00
IUUC-Vda-129699	Verticillium dahliae	32.06	6.00e-61	227.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence