iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099587

Ensembl Protein ID

POPTR_0009s14710.1

UniProt Accession

U5G0X0; U5G0X0_POPTR

Genbank Protein ID

ERP57108.1

Protein Name

Protein HIRA

Genbank Nucleotide ID

CM000345

Gene Name

POPTR_0009s14710g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0009s14710	POPTR_0009s14710.1	POPTR_0009s14710.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.10e-22	77.3	123	160
UBD/Beta-Prp	4.60e-41	142.0	11	207

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt++v +l++ +d  +l+sGs D+ti++W+++ g ++
   Q: 123  GHTADVVDLNWsPDdSILASGSLDNTIHIWNMSNGICT 160
           8***********77799**************9998886 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkl...........lrslsgheaevtavkfspdgkilvtgseDrtikvw........ 79
           h+  +i ++++ p++  +atg+ d+++++w++ + +            l++l +h + v++v++ ++g + ++gs+D++i v         
   Q: 11   HEGMQIFSIDIQPGGHRFATGGGDHKVRIWNMNSVSRnleineptqrlLATLRDHFGSVNCVRWAKHGRYVASGSDDQVILVHerkpgsgt 101
           55567778999**********************988899********************************************88888888 PP
   S: 80   .........dlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtv 161
                    d+++ k  +tl+gh+++v++l++sp+++ l+sGs d+ti++w++++g c   +l+gh+++v +v+++p g+ ++s s+D+tv
   Q: 102  tefgsgeppDVENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSNGICTA-VLRGHSSLVKGVTWDPIGSFIASQSDDKTV 191
           888888888888***********************************************9.****************************** PP
   S: 162  rlWdlktgkllrtltg 177
            +W+ +  +l ++  g
   Q: 192  IIWRTSDWSLAHRTDG 207
           ***9977777777655 PP

Organism

Populus trichocarpa

Functional Description
(View)

Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle.

Protein Sequence
(Fasta)

MIAEKPSWVR HEGMQIFSID IQPGGHRFAT GGGDHKVRIW NMNSVSRNLE INEPTQRLLA 60
TLRDHFGSVN CVRWAKHGRY VASGSDDQVI LVHERKPGSG TTEFGSGEPP DVENWKVAMT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTGTTTGT TGGTTTATAG TGAAGTGGGA GTTCAATTGT GAACTGGGTT TTGGTTCTTT 60
AGTGTAATTG AATGTTTTAG TGTTGAAAAA AGTTATGAAC TTTTGATACC CTTTTGGTGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat

Interpro

IPR031120--HIR1
IPR011494--Hira
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF07569--Hira
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0031491--F:nucleosome binding
GO:0003714--F:transcription corepressor activity
GO:0016569--P:covalent chromatin modification
GO:0006336--P:DNA replication-independent nucleosome assembly
GO:0031935--P:regulation of chromatin silencing
GO:0006351--P:transcription, DNA-templated

KEGG

pop:POPTR_0009s14710g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001039	Aegilops tauschii	66.83	0.00e+00	1374.00
IUUC-Atr-003132	Amborella trichopoda	72.39	0.00e+00	1415.00
IUUC-Aca-004733	Anolis carolinensis	37.93	2.00e-87	317.00
IUUC-Aly-005446	Arabidopsis lyrata	71.89	0.00e+00	1406.00
IUUC-Ath-007627	Arabidopsis thaliana	71.36	0.00e+00	1398.00
IUUC-Acl-008104	Aspergillus clavatus	30.89	2.00e-69	257.00
IUUC-Afl-008591	Aspergillus flavus	32.71	1.00e-67	251.00
IUUC-Ang-009655	Aspergillus niger	31.51	2.00e-68	253.00
IUUC-Aor-010119	Aspergillus oryzae	32.71	1.00e-67	251.00
IUUC-Ate-010530	Aspergillus terreus	27.47	3.00e-55	209.00
IUUC-Bta-013320	Bos taurus	38.56	2.00e-81	296.00
IUUC-Bci-013795	Botrytis cinerea	31.42	7.00e-73	268.00
IUUC-Bdi-014075	Brachypodium distachyon	69.92	0.00e+00	1422.00
IUUC-Bol-016440	Brassica oleracea	71.07	0.00e+00	1391.00
IUUC-Bra-016651	Brassica rapa	70.67	0.00e+00	1357.00
IUUC-Cel-018692	Caenorhabditis elegans	28.75	2.00e-45	177.00
IUUC-Cja-018987	Callithrix jacchus	37.61	6.00e-73	268.00
IUUC-Cpo-021484	Cavia porcellus	42.35	2.00e-84	306.00
IUUC-Csa-023081	Chlorocebus sabaeus	38.54	3.00e-86	313.00
IUUC-Cin-025182	Ciona intestinalis	36.56	4.00e-83	302.00
IUUC-Csv-026154	Ciona savignyi	36.99	3.00e-82	299.00
IUUC-Cne-026891	Cryptococcus neoformans	28.66	5.00e-93	335.00
IUUC-Cme-027349	Cyanidioschyzon merolae	24.91	1.00e-60	228.00
IUUC-Dre-027655	Danio rerio	37.93	2.00e-83	303.00
IUUC-Dno-029557	Dasypus novemcinctus	35.04	1.00e-68	254.00
IUUC-Dse-031334	Dothistroma septosporum	25.66	4.00e-90	325.00
IUUC-Dme-031746	Drosophila melanogaster	36.38	4.00e-84	306.00
IUUC-Ete-032384	Echinops telfairi	34.23	1.00e-61	231.00
IUUC-Eca-033430	Equus caballus	38.76	4.00e-81	295.00
IUUC-Fca-036121	Felis catus	41.79	1.00e-81	297.00
IUUC-Fal-036817	Ficedula albicollis	36.49	2.00e-80	293.00
IUUC-Gmo-039151	Gadus morhua	41.10	4.00e-82	299.00
IUUC-Gac-041405	Gasterosteus aculeatus	35.35	1.00e-78	287.00
IUUC-Gma-042800	Glycine max	77.74	0.00e+00	1610.00
IUUC-Ggo-045430	Gorilla gorilla	38.95	2.00e-86	313.00
IUUC-Hsa-046442	Homo sapiens	38.95	2.00e-86	313.00
IUUC-Hvu-047587	Hordeum vulgare	68.77	0.00e+00	1325.00
IUUC-Itr-048910	Ictidomys tridecemlineatus	41.77	8.00e-62	229.00
IUUC-Kpa-049145	Komagataella pastoris	30.82	1.00e-57	218.00
IUUC-Lch-050474	Latimeria chalumnae	36.84	4.00e-80	292.00
IUUC-Lpe-051209	Leersia perrieri	67.13	0.00e+00	1358.00
IUUC-Loc-052119	Lepisosteus oculatus	37.04	4.00e-80	292.00
IUUC-Lma-053237	Leptosphaeria maculans	33.73	5.00e-66	246.00
IUUC-Laf-053718	Loxodonta africana	37.93	6.00e-87	315.00
IUUC-Mcc-055621	Macaca mulatta	38.06	5.00e-73	269.00
IUUC-Meu-055914	Macropus eugenii	41.03	5.00e-54	206.00
IUUC-Mor-057090	Magnaporthe oryzae	34.73	1.00e-67	251.00
IUUC-Mtr-057744	Medicago truncatula	75.50	0.00e+00	1575.00
IUUC-Mla-058914	Melampsora laricipopulina	27.08	6.00e-80	291.00
IUUC-Mvi-060432	Microbotryum violaceum	32.49	2.00e-57	217.00
IUUC-Mdo-062301	Monodelphis domestica	37.12	2.00e-84	306.00
IUUC-Mmu-063888	Mus musculus	37.12	1.00e-85	311.00
IUUC-Mac-064768	Musa acuminata	71.96	0.00e+00	1361.00
IUUC-Mlu-067542	Myotis lucifugus	37.60	4.00e-82	299.00
IUUC-Nfi-068396	Neosartorya fischeri	34.66	5.00e-63	236.00
IUUC-Ncr-068842	Neurospora crassa	26.61	3.00e-91	329.00
IUUC-Nle-070156	Nomascus leucogenys	38.74	9.00e-86	311.00
IUUC-Opr-070808	Ochotona princeps	34.34	2.00e-52	200.00
IUUC-Ont-072105	Oreochromis niloticus	38.13	1.00e-82	301.00
IUUC-Ocu-074962	Oryctolagus cuniculus	37.11	6.00e-81	295.00
IUUC-Oba-075178	Oryza barthii	71.16	0.00e+00	1352.00
IUUC-Obr-076399	Oryza brachyantha	69.58	0.00e+00	1384.00
IUUC-Ogu-078797	Oryza glumaepatula	71.16	0.00e+00	1352.00
IUUC-Oin-080085	Oryza indica	70.53	0.00e+00	1273.00
IUUC-Olo-081048	Oryza longistaminata	87.31	1.00e-170	593.00
IUUC-Ome-081324	Oryza meridionalis	71.06	0.00e+00	1351.00
IUUC-Oni-082548	Oryza nivara	71.06	0.00e+00	1350.00
IUUC-Opu-084008	Oryza punctata	76.84	0.00e+00	765.00
IUUC-Oru-084339	Oryza rufipogon	71.16	0.00e+00	1352.00
IUUC-Osa-085782	Oryza sativa	71.16	0.00e+00	1352.00
IUUC-Ola-087302	Oryzias latipes	36.11	8.00e-79	288.00
IUUC-Olu-087611	Ostreococcus lucimarinus	41.20	6.00e-115	408.00
IUUC-Oar-089229	Ovis aries	34.01	3.00e-65	243.00
IUUC-Ptr-090715	Pan troglodytes	38.54	2.00e-86	313.00
IUUC-Pan-092318	Papio anubis	37.91	3.00e-82	299.00
IUUC-Ppa-095499	Physcomitrella patens	51.18	0.00e+00	928.00
IUUC-Pfo-096857	Poecilia formosa	37.45	4.00e-80	292.00
IUUC-Pab-098047	Pongo abelii	38.95	3.00e-86	313.00
IUUC-Pca-100558	Procavia capensis	49.22	4.00e-48	186.00
IUUC-Ppe-101261	Prunus persica	80.06	0.00e+00	1566.00
IUUC-Pva-102683	Pteropus vampyrus	38.74	8.00e-83	301.00
IUUC-Pgr-103660	Puccinia graminis	36.49	2.00e-59	223.00
IUUC-Rno-105566	Rattus norvegicus	37.73	8.00e-86	311.00
IUUC-Sha-107514	Sarcophilus harrisii	34.35	6.00e-69	255.00
IUUC-Spo-108162	Schizosaccharomyces pombe	33.91	2.00e-74	273.00
IUUC-Smo-109186	Selaginella moellendorffii	50.87	0.00e+00	917.00
IUUC-Sit-109980	Setaria italica	71.47	0.00e+00	1406.00
IUUC-Sly-111547	Solanum lycopersicum	71.50	0.00e+00	1499.00
IUUC-Stu-112705	Solanum tuberosum	72.44	0.00e+00	1496.00
IUUC-Sar-113222	Sorex araneus	36.85	2.00e-74	273.00
IUUC-Sbi-114272	Sorghum bicolor	70.52	0.00e+00	1370.00
IUUC-Sre-115061	Sporisorium reilianum	35.54	3.00e-70	259.00
IUUC-Ssc-116364	Sus scrofa	37.94	4.00e-81	295.00
IUUC-Tgu-116645	Taeniopygia guttata	36.38	1.00e-80	294.00
IUUC-Tru-117590	Takifugu rubripes	37.78	3.00e-84	306.00
IUUC-Tsy-119212	Tarsius syrichta	41.37	2.00e-68	253.00
IUUC-Tni-119915	Tetraodon nigroviridis	38.79	5.00e-86	312.00
IUUC-Tca-121765	Theobroma cacao	80.38	0.00e+00	1687.00
IUUC-Tre-121887	Trichoderma reesei	35.06	2.00e-61	230.00
IUUC-Tae-123009	Triticum aestivum	63.00	0.00e+00	856.00
IUUC-Tur-126483	Triticum urartu	68.98	0.00e+00	1396.00
IUUC-Ttr-129077	Tursiops truncatus	34.85	2.00e-71	263.00
IUUC-Uma-129465	Ustilago maydis	34.83	3.00e-72	266.00
IUUC-Vda-129844	Verticillium dahliae	33.72	5.00e-68	252.00
IUUC-Xma-134139	Xiphophorus maculatus	34.68	9.00e-67	247.00
IUUC-Zma-135839	Zea mays	70.67	0.00e+00	1398.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence