iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Oru-085220

Ensembl Protein ID

ORUFI07G22200.2

UniProt Accession

A0A0E0QAU9; A0A0E0QAU9_ORYRU

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ORUFI07G22200	ORUFI07G22200.1	ORUFI07G22200.1
ORUFI07G22200	ORUFI07G22200.2	ORUFI07G22200.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-31	107.4	191	222

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gHt+sv ++a  ++ ++++sGs+D++ik+W++
   Q: 191  GHTSSVQSVAVdPStNMICSGSWDNSIKLWSV 222
           8***********666***************96 PP

Organism

Oryza rufipogon

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDSGGASDPS RQVRVRFVTK LPAPLRAPPT FIAVPADLTR MGLSEIVNSL LLAASPDHQA 60
QPFDFLVDGE LVRLPLQEFL LAKGISVERV LELEYVKAVA PRKQEDPCPH DDWVSAVDGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACTCCG GCGGCGCCTC CGACCCCTCG CGCCAGGTGC GGGTGCGCTT CGTGACGAAG 60
CTCCCCGCGC CGCTGCGCGC GCCGCCCACC TTCATTGCCG TCCCCGCCGA CCTCACCCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	82.41	0.00e+00	726.00
IUUC-Aml-001997	Ailuropoda melanoleuca	34.42	2.00e-51	195.00
IUUC-Atr-002544	Amborella trichopoda	60.73	5.00e-153	533.00
IUUC-Apl-003981	Anas platyrhynchos	32.62	2.00e-51	195.00
IUUC-Aca-004370	Anolis carolinensis	34.05	4.00e-61	228.00
IUUC-Aly-006455	Arabidopsis lyrata	60.00	4.00e-156	543.00
IUUC-Ath-006669	Arabidopsis thaliana	59.95	2.00e-152	531.00
IUUC-Ago-007864	Ashbya gossypii	30.17	4.00e-40	158.00
IUUC-Acl-008177	Aspergillus clavatus	28.72	6.00e-36	144.00
IUUC-Afl-008617	Aspergillus flavus	28.95	3.00e-32	132.00
IUUC-Afu-008752	Aspergillus fumigatus	28.81	4.00e-33	135.00
IUUC-Ani-009136	Aspergillus nidulans	29.00	3.00e-34	139.00
IUUC-Ang-009701	Aspergillus niger	27.87	7.00e-31	127.00
IUUC-Aor-009884	Aspergillus oryzae	28.95	1.00e-32	133.00
IUUC-Ate-010472	Aspergillus terreus	26.67	3.00e-12	65.10
IUUC-Ame-011432	Astyanax mexicanus	33.09	7.00e-61	227.00
IUUC-Bgr-012218	Blumeria graminis	27.67	6.00e-32	131.00
IUUC-Bta-012829	Bos taurus	33.81	4.00e-52	198.00
IUUC-Bci-013953	Botrytis cinerea	27.67	1.00e-33	137.00
IUUC-Bdi-014351	Brachypodium distachyon	82.49	0.00e+00	704.00
IUUC-Bol-016514	Brassica oleracea	60.14	7.00e-144	503.00
IUUC-Bra-016988	Brassica rapa	60.37	1.00e-144	505.00
IUUC-Cel-018569	Caenorhabditis elegans	24.31	2.00e-26	112.00
IUUC-Cja-019468	Callithrix jacchus	34.29	2.00e-50	192.00
IUUC-Cfa-020471	Canis familiaris	33.09	2.00e-50	192.00
IUUC-Cpo-022260	Cavia porcellus	35.24	4.00e-52	198.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	37.62	3.00e-62	231.00
IUUC-Csa-023989	Chlorocebus sabaeus	34.05	2.00e-50	192.00
IUUC-Cho-024426	Choloepus hoffmanni	32.29	6.00e-37	147.00
IUUC-Cin-025789	Ciona intestinalis	30.26	1.00e-48	186.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	29.67	7.00e-07	46.60
IUUC-Cne-027063	Cryptococcus neoformans	25.98	2.00e-24	106.00
IUUC-Dre-027907	Danio rerio	33.81	9.00e-62	230.00
IUUC-Dno-029225	Dasypus novemcinctus	34.29	7.00e-53	200.00
IUUC-Dor-031082	Dipodomys ordii	31.90	4.00e-20	91.70
IUUC-Dse-031308	Dothistroma septosporum	35.51	4.00e-50	191.00
IUUC-Dme-032189	Drosophila melanogaster	28.16	4.00e-39	155.00
IUUC-Ete-032247	Echinops telfairi	32.62	9.00e-46	177.00
IUUC-Eca-034285	Equus caballus	33.81	3.00e-51	195.00
IUUC-Eeu-035322	Erinaceus europaeus	29.70	8.00e-42	164.00
IUUC-Fca-036114	Felis catus	33.73	8.00e-52	197.00
IUUC-Fal-036891	Ficedula albicollis	32.43	6.00e-45	174.00
IUUC-Fox-037965	Fusarium oxysporum	24.40	8.00e-28	117.00
IUUC-Fso-038244	Fusarium solani	25.78	4.00e-31	128.00
IUUC-Gmo-039040	Gadus morhua	33.57	4.00e-62	231.00
IUUC-Ggr-040093	Gaeumannomyces graminis	22.93	2.00e-23	103.00
IUUC-Gga-040610	Gallus gallus	32.85	3.00e-56	211.00
IUUC-Gac-042117	Gasterosteus aculeatus	32.86	1.00e-59	223.00
IUUC-Gma-043967	Glycine max	61.19	2.00e-155	541.00
IUUC-Ggo-045179	Gorilla gorilla	33.81	8.00e-50	190.00
IUUC-Hsa-046114	Homo sapiens	34.05	4.00e-50	191.00
IUUC-Hvu-047331	Hordeum vulgare	80.65	0.00e+00	634.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	34.21	7.00e-53	200.00
IUUC-Kpa-049304	Komagataella pastoris	28.11	2.00e-39	155.00
IUUC-Lch-050655	Latimeria chalumnae	30.32	1.00e-37	149.00
IUUC-Lpe-051675	Leersia perrieri	92.18	0.00e+00	805.00
IUUC-Loc-052868	Lepisosteus oculatus	33.49	7.00e-61	227.00
IUUC-Lma-053258	Leptosphaeria maculans	31.64	5.00e-39	156.00
IUUC-Laf-053993	Loxodonta africana	34.29	1.00e-52	199.00
IUUC-Mcc-055128	Macaca mulatta	28.30	9.00e-28	117.00
IUUC-Meu-056501	Macropus eugenii	33.63	3.00e-44	172.00
IUUC-Mor-057114	Magnaporthe oryzae	28.98	4.00e-35	142.00
IUUC-Mpo-057463	Magnaporthe poae	39.81	2.00e-15	75.50
IUUC-Mtr-058367	Medicago truncatula	57.89	2.00e-145	508.00
IUUC-Mla-059107	Melampsora laricipopulina	25.21	4.00e-31	128.00
IUUC-Mga-059745	Meleagris gallopavo	33.50	6.00e-55	207.00
IUUC-Mvi-060362	Microbotryum violaceum	24.73	3.00e-28	119.00
IUUC-Mdo-062257	Monodelphis domestica	34.52	6.00e-58	217.00
IUUC-Mmu-063546	Mus musculus	32.85	5.00e-52	197.00
IUUC-Mac-065540	Musa acuminata	68.71	7.00e-173	599.00
IUUC-Mpu-066284	Mustela putorius furo	34.05	6.00e-52	197.00
IUUC-Mlu-067241	Myotis lucifugus	34.52	1.00e-52	199.00
IUUC-Nfi-068260	Neosartorya fischeri	28.76	2.00e-35	143.00
IUUC-Ncr-068719	Neurospora crassa	28.64	6.00e-29	121.00
IUUC-Nle-068981	Nomascus leucogenys	34.29	2.00e-49	189.00
IUUC-Opr-071218	Ochotona princeps	31.84	8.00e-48	183.00
IUUC-Ont-071646	Oreochromis niloticus	32.61	2.00e-54	206.00
IUUC-Oan-073453	Ornithorhynchus anatinus	32.70	4.00e-59	221.00
IUUC-Ocu-074008	Oryctolagus cuniculus	34.21	7.00e-53	200.00
IUUC-Oba-075712	Oryza barthii	88.21	0.00e+00	739.00
IUUC-Obr-076721	Oryza brachyantha	89.02	0.00e+00	785.00
IUUC-Ogl-077229	Oryza glaberrima	95.87	0.00e+00	840.00
IUUC-Ogu-078977	Oryza glumaepatula	88.68	0.00e+00	743.00
IUUC-Oin-079683	Oryza indica	95.87	0.00e+00	842.00
IUUC-Olo-080291	Oryza longistaminata	71.08	1.00e-138	485.00
IUUC-Ome-081834	Oryza meridionalis	95.55	0.00e+00	823.00
IUUC-Oni-082507	Oryza nivara	99.54	0.00e+00	872.00
IUUC-Opu-083396	Oryza punctata	93.76	0.00e+00	818.00
IUUC-Osa-085767	Oryza sativa	95.87	0.00e+00	842.00
IUUC-Ola-087420	Oryzias latipes	33.25	5.00e-62	231.00
IUUC-Olu-087740	Ostreococcus lucimarinus	33.10	7.00e-57	214.00
IUUC-Oga-088264	Otolemur garnettii	33.81	1.00e-49	189.00
IUUC-Oar-089335	Ovis aries	34.05	1.00e-52	199.00
IUUC-Ptr-091320	Pan troglodytes	34.05	4.00e-50	191.00
IUUC-Pan-092833	Papio anubis	34.29	1.00e-50	193.00
IUUC-Psi-093504	Pelodiscus sinensis	32.13	1.00e-52	199.00
IUUC-Pma-094189	Petromyzon marinus	34.12	3.00e-57	215.00
IUUC-Pno-094929	Phaeosphaeria nodorum	29.72	9.00e-37	147.00
IUUC-Ppa-095429	Physcomitrella patens	49.77	5.00e-118	417.00
IUUC-Pfo-096337	Poecilia formosa	34.29	3.00e-61	228.00
IUUC-Pab-097571	Pongo abelii	34.05	3.00e-50	191.00
IUUC-Pop-099977	Populus trichocarpa	62.62	5.00e-156	543.00
IUUC-Pca-100394	Procavia capensis	32.16	8.00e-42	164.00
IUUC-Ppe-101848	Prunus persica	59.00	1.00e-154	538.00
IUUC-Pva-102921	Pteropus vampyrus	32.14	5.00e-19	88.60
IUUC-Pgr-103637	Puccinia graminis	26.01	2.00e-30	125.00
IUUC-Ptt-103781	Puccinia triticina	26.45	2.00e-29	123.00
IUUC-Pte-104135	Pyrenophora teres	29.36	3.00e-36	147.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	29.26	2.00e-38	153.00
IUUC-Rno-105114	Rattus norvegicus	33.09	2.00e-51	196.00
IUUC-Sce-106401	Saccharomyces cerevisiae	29.26	6.00e-38	151.00
IUUC-Sha-107122	Sarcophilus harrisii	34.20	5.00e-57	214.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	28.76	9.00e-36	144.00
IUUC-Spo-108134	Schizosaccharomyces pombe	27.77	1.00e-34	140.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	27.80	3.00e-37	149.00
IUUC-Smo-108720	Selaginella moellendorffii	48.13	1.00e-112	399.00
IUUC-Sit-110354	Setaria italica	83.37	0.00e+00	730.00
IUUC-Sly-111023	Solanum lycopersicum	54.85	6.00e-140	490.00
IUUC-Stu-112778	Solanum tuberosum	61.33	1.00e-150	525.00
IUUC-Sar-113596	Sorex araneus	31.71	1.00e-42	166.00
IUUC-Sbi-114193	Sorghum bicolor	81.25	0.00e+00	679.00
IUUC-Sre-115002	Sporisorium reilianum	22.93	1.00e-14	73.90
IUUC-Ssc-116066	Sus scrofa	34.05	5.00e-52	197.00
IUUC-Tgu-117048	Taeniopygia guttata	33.16	9.00e-52	196.00
IUUC-Tni-119820	Tetraodon nigroviridis	34.93	1.00e-57	216.00
IUUC-Tca-121605	Theobroma cacao	62.01	1.00e-159	555.00
IUUC-Tre-121947	Trichoderma reesei	25.78	4.00e-31	128.00
IUUC-Tvi-122481	Trichoderma virens	25.77	6.00e-31	127.00
IUUC-Tae-123504	Triticum aestivum	82.64	0.00e+00	728.00
IUUC-Tur-126586	Triticum urartu	82.41	0.00e+00	669.00
IUUC-Tme-126900	Tuber melanosporum	30.02	3.00e-46	178.00
IUUC-Tbe-127736	Tupaia belangeri	28.79	3.00e-29	122.00
IUUC-Ttr-129041	Tursiops truncatus	30.86	2.00e-39	156.00
IUUC-Uma-129628	Ustilago maydis	27.67	1.00e-09	57.80
IUUC-Vpa-130260	Vicugna pacos	34.05	4.00e-52	197.00
IUUC-Vvi-131009	Vitis vinifera	64.68	5.00e-168	583.00
IUUC-Xtr-132083	Xenopus tropicalis	34.53	2.00e-56	212.00
IUUC-Xma-133094	Xiphophorus maculatus	32.93	5.00e-60	224.00
IUUC-Yli-134531	Yarrowia lipolytica	27.24	8.00e-27	114.00
IUUC-Zma-135509	Zea mays	81.48	0.00e+00	712.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence