iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099645

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000337

Gene Name

POPTRDRAFT_1070235; POPTR_0001s38800g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0001s38800	POPTR_0001s38800.1	POPTR_0001s38800.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	4.10e-77	260.7	352	656

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 2    GlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefsgyeqqD 91
           Gl N gN+CY N+vLQcL+ +++l  +ll+ ++++++      +++ +l+++l++ +  l  +  +  sp+++l +++k++ ++   +q+D
   Q: 352  GLVNCGNSCYANAVLQCLTCTKPLIIFLLRrSHSRAC-----CGKDWCLMCELEQHVMML-RECGGPLSPSRILLHMRKINCQIGDGSQED 436
           9*****************************4444444.....46688**********766.99**************************** PP
   S: 92   aqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgkeet 182
           a+Efl+ l+ ++++ +        e++          e + ++  +++++i+++F+g l+s++kcl+c+++s+r+e+ +dl+l++ g  e 
   Q: 437  AHEFLRLLIASMQSIC-------LERL--------GGEDKVDPRLQETTFIQHTFGGLLRSKVKCLRCHHESERYENIMDLTLEIFGWVE- 511
           ****************.......3333........33447889999*****************************************997. PP
   S: 183  kkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfctspeekqk 273
              sl+d+L +ft++eel+gen+y c +c ++++a+k+l++++ P++L++ LkRf    ++++  kink+++fp++Ld+ pf+t    ++ 
   Q: 512  ---SLEDALTQFTTPEELDGENMYRCGRCAAYVRARKQLSIHEAPNILTIVLKRF----QEGKYGKINKCITFPDMLDMIPFMTGMG-DV- 593
           ...8***************************************************....446778********************44.44. PP
   S: 274  ekkkYeLiavvvHsGsls...sGHYvayvknekgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
            +  Y L+avvvH  +l+   sGHYvayvk+ +g+W+++dD++V++v++++v     + aY+lfYkr
   Q: 594  -PPLYMLYAVVVHLDTLNasfSGHYVAYVKDLRGSWFKIDDTEVHPVSMSQVML---EGAYILFYKR 656
           .9***********997664458********************************...9*******98 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MLEPREADIP VLFLVLVVLP LVAYILLGKW TESAKKRERI SLLAQLAAEE ACRAEVMATT 60
HVIPPMSTSK NGIQVCARCF SPATTRCSRC KSVRYCSGKC QIIHWRQAHK EECQLLETTS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGCAGTTTT GGATAGCATC GTGTGCTTAA TATTTCAGGA GGAGGAATCT TTTTGAAGAA 60
GAAGAAGAAG GAAGTGGAAC TGTTGTTTCT CTGTAGGCTT TAAGATTTCT CTCCTCTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR002893--Znf_MYND

PROSITE

PS00972--USP_1
PS50235--USP_3
PS01360--ZF_MYND_1
PS50865--ZF_MYND_2

Pfam

PF00443--UCH
PF01753--zf-MYND

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0001s38800g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000426	Aegilops tauschii	48.09	2.00e-159	555.00
IUUC-Bra-017772	Brassica rapa	57.61	0.00e+00	722.00
IUUC-Olu-087767	Ostreococcus lucimarinus	41.21	9.00e-64	236.00
IUUC-Sbi-114225	Sorghum bicolor	45.17	2.00e-165	576.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence