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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Ath-006626
UUCD1 version UUC-ArT-00702
Ensembl Protein ID AT4G02570.3
UniProt Accession Q94AH6; O22770; Q56W31; CUL1_ARATH
Genbank Protein ID CAC85264.1; AAC78267.1; CAB80750.1; AEE82194.1; AEE82195.1; AEE82196.1; AEE82197.1; AAK76704.1; AAM91812.1; BAD95380.1
Protein Name Cullin-1
Genbank Nucleotide ID AJ318017; AC002330; AL161494; CP002687; CP002687; CP002687; CP002687; AY046030; AY133878; AK222216
Gene Name CUL1; At4g02570; T10P11.26
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT4G02570 AT4G02570.3 AT4G02570.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
PINAHINTMentha
Post-translational Modifications (PTMs)
dbPTM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/Cullin 6.40e-152 508.3 31 641
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/Cullin

   S: 12   qesv.kkeyeelytavynlclsk....vgaklYkklkevleefi.kqvkkkveesedeqlLktynreWekfreqlkvlrkifayldrtyvkkskkvse 103
    + + ++y+ lyt +yn+c++k ++++lY+k +e+ ee+i v e++de +L+ + + W +++ + l + f yldr+++ + +++ +
   Q: 31 EPAFdSEQYMMLYTTIYNMCTQKpphdYSQQLYDKYREAFEEYInSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIAR-RSLPP 127
    44455899***************9*99*****************888999999**9************************************.9**** PP
   S: 104 vrkLaldlwrkeivedikkrllelllklieaeRkgeavdrrllsgvveslveLslnklaiykesFEakfleatqefykaesaeflqenevdeYlkkve 201
    ++++l +r+ + +++++++ ++++ l+ +eR+ge++dr ll++v +ve+++ + + y+e+FE+ l+ t+ +y++++++ +qe ++ +Y+ k e
   Q: 128 LNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSE 225
    ************************************************************************************************** PP
   S: 202 arlneeeeraaryleestetkLlevvekeliakhlesll....aelvallrdkktedlsrmykLlsrvlngleellkeleshikeqgkaaltaeekek 295
    + l++e er+a+yl++s+e kL+e+v++el++ ++ +ll +++ allrd+k +dlsrmy+L +++l gle++++ +++h+ +g+a+++++e +
   Q: 226 ECLKKERERVAHYLHSSSEPKLVEKVQHELLVVFASQLLekehSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVANIFKQHVTAEGNALVQQAEDTA 323
    ********************************999999999989************************************************555444 PP
   S: 296 ..........dpkkyVerllelknklqklvseaFnndakFlkaldkafetfvnknsvlkaakspEllAryiDqlLrks.skglteeeleaqldkvllv 382
    + + +++++el++k+ v e+F+n + F kal++afe f nk+ + + s+EllA ++D+ L+k+ s +l +e +e++l+kv+ +
   Q: 324 tnqvantasvQEQVLIRKVIELHDKYMVYVTECFQNHTLFHKALKEAFEIFCNKT--VAGSSSAELLATFCDNILKKGgSEKLSDEAIEDTLEKVVKL 419
    46899999887789*****************************************..7779999********************************** PP
   S: 383 fkyisekdvFekyYkkhLakRLlsgksasseaEesviekLkeecgaeftskLerMfqdlkvSedlnrqFkeek.enteesesvelsvlvLsagaWpta 479
    + yis+kd+F ++Y+k La+RLl + sa ++ E+s+++kLk++cg +ftsk+e+M++dl + ++ ++ F++ +n ++++++l+v vL++g+Wp +
   Q: 420 LAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLgSNPAANPGIDLTVTVLTTGFWPSY 517
    **********************************************************************8753788899****************** PP
   S: 480 setekvsLPaelektiekfeefYlekhsgRkLqWqhtlgraelkaelkkgkyelqVstfQmavLLafnnsekvsveelkkatelpeeeLrrtlqsLvs 577
    + ++LP+e+ k +e f+ fY+ k ++RkL+W ++lg+++++ +++++ el Vst+Q+avLL+fn+++k+s+ e+ ++ +l++e+L r l sL +
   Q: 518 KSFD-INLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSC 614
    7755.********************************************************************************************* PP
   S: 578 skkqvlkkepeskeieeedlfsvNqef 604
    k ++l kep++k ++++d f +N++f
   Q: 615 AKYKILLKEPNTKTVSQNDAFEFNSKF 641
    ************************998 PP
   

Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Regulator of mitotic processes which plays a role during gametogenesis and embryogenesis. Together with SKP1, RBX1 and a F-box protein, it forms a SCF complex. The functional specificity of this complex depends of the type of F-box protein. SCF(UFO) is implicated in floral organ development. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1/ZTL), SCF(ADO2/LKP2), SCF(ADO3/FKF1) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling.
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Regulator of mitotic processes which plays a role during gametogenesis and embryogenesis. Together with SKP1, RBX1 and a F-box protein, it forms a SCF complex. The functional specificity of this complex depends of the type of F-box protein. SCF(UFO) is implicated in floral organ development. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1/ZTL), SCF(ADO2/LKP2), SCF(ADO3/FKF1) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling.
Protein Sequence
(Fasta)
MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ 60
QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN HKVMVRWLSR FFYYLDRYFI 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-006626|E3,Cullin|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AACGAGTTTG TTTCCTGAGA TATCTTTTCA CCGCCCTTCT CATAGGTCTC GTCTCTCTTT 60
CTCTCTATTT TACGCTTTTT TCCTGAACGA TTCTTAGGGT TTTGATTCTC TCTCTCTCTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-006626|E3,Cullin|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0927--Auxin signaling pathway
KW-0131--Cell cycle
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0217--Developmental protein
KW-0936--Ethylene signaling pathway
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway

Interpro

IPR016157--Cullin_CS
IPR016158--Cullin_homology
IPR001373--Cullin_N
IPR019559--Cullin_neddylation_domain
IPR016159--Cullin_repeat-like_dom
IPR011991--WHTH_DNA-bd_dom

PROSITE

PS01256--CULLIN_1
PS50069--CULLIN_2

Pfam

PF00888--Cullin
PF10557--Cullin_Nedd8

SMART

SM00182--CULLIN
SM00884--Cullin_Nedd8

Gene Ontology

GO:0000794--C:condensed nuclear chromosome
GO:0031461--C:cullin-RING ubiquitin ligase complex
GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0009524--C:phragmoplast
GO:0005819--C:spindle
GO:0031625--F:ubiquitin protein ligase binding
GO:0009734--P:auxin-activated signaling pathway
GO:0007049--P:cell cycle
GO:0009793--P:embryo development ending in seed dormancy
GO:0009873--P:ethylene-activated signaling pathway
GO:0009867--P:jasmonic acid mediated signaling pathway
GO:0048366--P:leaf development
GO:0010087--P:phloem or xylem histogenesis
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0042752--P:regulation of circadian rhythm
GO:0009733--P:response to auxin
GO:0009753--P:response to jasmonic acid

KEGG ath:AT4G02570
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000358 Aegilops tauschii 77.47 0.00e+00 1195.00
IUUC-Atr-002822 Amborella trichopoda 81.49 0.00e+00 1247.00
IUUC-Aly-005410 Arabidopsis lyrata 97.97 0.00e+00 1471.00
IUUC-Ago-007977 Ashbya gossypii 22.91 1.00e-59 224.00
IUUC-Bdi-014240 Brachypodium distachyon 80.41 0.00e+00 1234.00
IUUC-Bol-016311 Brassica oleracea 95.66 0.00e+00 1440.00
IUUC-Bra-017061 Brassica rapa 95.53 0.00e+00 1438.00
IUUC-Cel-018294 Caenorhabditis elegans 29.76 2.00e-90 326.00
IUUC-Cre-022585 Chlamydomonas reinhardtii 63.98 0.00e+00 967.00
IUUC-Csv-026083 Ciona savignyi 31.28 4.00e-103 368.00
IUUC-Cne-026919 Cryptococcus neoformans 30.36 1.00e-96 347.00
IUUC-Gma-043668 Glycine max 83.11 0.00e+00 1281.00
IUUC-Hvu-047383 Hordeum vulgare 80.81 0.00e+00 1246.00
IUUC-Lpe-051606 Leersia perrieri 80.52 0.00e+00 1218.00
IUUC-Mtr-058635 Medicago truncatula 81.62 0.00e+00 1261.00
IUUC-Mla-059021 Melampsora laricipopulina 30.70 3.00e-93 335.00
IUUC-Mac-065440 Musa acuminata 82.43 0.00e+00 1268.00
IUUC-Oba-075744 Oryza barthii 80.54 0.00e+00 1236.00
IUUC-Obr-076289 Oryza brachyantha 80.05 0.00e+00 1210.00
IUUC-Ogl-077579 Oryza glaberrima 79.05 0.00e+00 1212.00
IUUC-Ogu-078249 Oryza glumaepatula 79.76 0.00e+00 1229.00
IUUC-Oin-079171 Oryza indica 79.05 0.00e+00 1212.00
IUUC-Olo-080532 Oryza longistaminata 79.89 0.00e+00 1230.00
IUUC-Ome-081358 Oryza meridionalis 79.89 0.00e+00 1230.00
IUUC-Oni-082083 Oryza nivara 79.89 0.00e+00 1230.00
IUUC-Opu-083214 Oryza punctata 80.81 0.00e+00 1239.00
IUUC-Oru-085124 Oryza rufipogon 79.89 0.00e+00 1230.00
IUUC-Osa-085572 Oryza sativa 80.54 0.00e+00 1236.00
IUUC-Olu-087721 Ostreococcus lucimarinus 54.91 0.00e+00 815.00
IUUC-Pma-094502 Petromyzon marinus 30.29 6.00e-98 351.00
IUUC-Pno-095067 Phaeosphaeria nodorum 29.37 2.00e-95 343.00
IUUC-Ppa-095864 Physcomitrella patens 80.00 0.00e+00 1188.00
IUUC-Pop-100087 Populus trichocarpa 83.65 0.00e+00 1272.00
IUUC-Ppe-101349 Prunus persica 84.55 0.00e+00 1338.00
IUUC-Smo-109541 Selaginella moellendorffii 78.88 0.00e+00 1161.00
IUUC-Sit-110264 Setaria italica 79.94 0.00e+00 1149.00
IUUC-Sly-111067 Solanum lycopersicum 83.24 0.00e+00 1279.00
IUUC-Stu-112374 Solanum tuberosum 81.50 0.00e+00 1211.00
IUUC-Sbi-114502 Sorghum bicolor 80.81 0.00e+00 1241.00
IUUC-Tca-121191 Theobroma cacao 89.30 0.00e+00 1355.00
IUUC-Tae-125618 Triticum aestivum 77.86 0.00e+00 1229.00
IUUC-Tur-126475 Triticum urartu 72.16 0.00e+00 1152.00
IUUC-Vvi-131423 Vitis vinifera 84.32 0.00e+00 1296.00
IUUC-Yli-134486 Yarrowia lipolytica 28.66 3.00e-83 302.00
Created Date 25-Jun-2017

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