iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007001

Ensembl Protein ID

AT5G51980.1

UniProt Accession

Q9FNZ1; Q9FJ94; C3H63_ARATH

Genbank Protein ID

CAC19848.1; BAB11046.1; AED96154.1; AED96155.2

Protein Name

Zinc finger CCCH domain-containing protein 63; Zinc finger CCCH domain and WD40 repeat-containing protein 2

Genbank Nucleotide ID

AJ252064; AB015478; CP002688; CP002688; BX831861

Gene Name

ZFWD2; At5g51980; MSG15.6

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G51980	AT5G51980.1	AT5G51980.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.70e-26	91.0	149	186

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH+  v+++a+ s+ + l +Gs D t++vWD  +g ++
   Q: 149  GHEKLVSGIALpSGsDKLYTGSKDETLRVWDCASGQCT 186
           899********966799***************999986 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDFDLNGGNK RVFNRLGGGG GSTRPMAPTD TRQKVCFHWR AGRCNRSPCP YLHRELPGPG 60
PGQGQGPGYT NKRVAEESGF AGPSHRRGPG FNGNSSSSWG RFGGNRTVTK TEKVCNFWVD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAGCTTATA AACACATACA AATAAATCCA CTCCAAAGTT TTTCTCTTTT TTCTCTGCAT 60
TATTATCACT TCACCACATT CACAACAATC CCAAATTTTT CTTTCTCATA CTTTCATATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR000571--Znf_CCCH

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS50103--ZF_C3H1

Pfam

PF00400--WD40
PF00642--zf-CCCH

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40
SM00356--ZnF_C3H1

Gene Ontology

GO:0003677--F:DNA binding
GO:0046872--F:metal ion binding
GO:0003729--F:mRNA binding

KEGG

ath:AT5G51980

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000399	Aegilops tauschii	42.60	1.00e-70	259.00
IUUC-Atr-002831	Amborella trichopoda	57.08	1.00e-147	515.00
IUUC-Aly-005699	Arabidopsis lyrata	96.82	0.00e+00	843.00
IUUC-Bdi-014857	Brachypodium distachyon	58.50	7.00e-149	519.00
IUUC-Bol-016382	Brassica oleracea	82.15	0.00e+00	722.00
IUUC-Bra-017351	Brassica rapa	81.94	0.00e+00	716.00
IUUC-Hvu-047824	Hordeum vulgare	57.29	8.00e-117	412.00
IUUC-Lpe-051596	Leersia perrieri	53.12	2.00e-126	444.00
IUUC-Oba-075769	Oryza barthii	52.39	6.00e-124	436.00
IUUC-Obr-076011	Oryza brachyantha	60.41	3.00e-152	530.00
IUUC-Ogl-077192	Oryza glaberrima	52.42	5.00e-77	280.00
IUUC-Ogu-078248	Oryza glumaepatula	52.91	5.00e-127	446.00
IUUC-Oin-079981	Oryza indica	58.97	1.00e-151	528.00
IUUC-Olo-080571	Oryza longistaminata	52.00	6.00e-116	409.00
IUUC-Ome-081598	Oryza meridionalis	52.24	2.00e-125	441.00
IUUC-Oni-082711	Oryza nivara	52.47	6.00e-126	443.00
IUUC-Opu-083451	Oryza punctata	57.08	8.00e-148	516.00
IUUC-Oru-085129	Oryza rufipogon	52.62	2.00e-123	434.00
IUUC-Ppa-096012	Physcomitrella patens	52.59	6.00e-110	390.00
IUUC-Ppe-101609	Prunus persica	71.56	0.00e+00	648.00
IUUC-Smo-109306	Selaginella moellendorffii	54.11	2.00e-97	348.00
IUUC-Sbi-114748	Sorghum bicolor	56.92	2.00e-146	511.00
IUUC-Tca-121658	Theobroma cacao	66.81	7.00e-174	602.00
IUUC-Tae-125577	Triticum aestivum	59.33	1.00e-151	528.00
IUUC-Tur-126095	Triticum urartu	53.31	6.00e-87	314.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence