iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006990

UUCD1 version

UUC-ArT-01019

Ensembl Protein ID

AT5G52850.1

UniProt Accession

Q9FLX6; PP430_ARATH

Genbank Protein ID

BAB10433.1; AED96268.1

Protein Name

Pentatricopeptide repeat-containing protein At5g52850, chloroplastic

Genbank Nucleotide ID

AB009055; CP002688

Gene Name

PCMP-H31; At5g52850; MXC20.7

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G52850	AT5G52850.1	AT5G52850.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/ECS/SOCS_VHL_BC-box	32.94	2.00e-01	36.20	IUUC-Hsa-046909

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MTSKVVAAAA SAFLSRTNEL GNLQKSCIRI LSFCESNSSR IGLHIHCPVI KFGLLENLDL 60
CNNLLSLYLK TDGIWNARKL FDEMSHRTVF AWTVMISAFT KSQEFASALS LFEEMMASGT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACGAGCA AAGTAGTAGC AGCAGCAGCT TCTGCATTTC TCTCTCGCAC TAACGAATTG 60
GGTAATCTTC AAAAATCATG TATTCGGATT CTCTCCTTCT GCGAATCGAA TTCATCACGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0150--Chloroplast
KW-0181--Complete proteome
KW-0934--Plastid
KW-1185--Reference proteome
KW-0677--Repeat
KW-0809--Transit peptide

Interpro

IPR032867--DYW_dom
IPR002885--Pentatricopeptide_repeat
IPR011990--TPR-like_helical_dom

PROSITE

PS51375--PPR

Pfam

PF14432--DYW_deaminase
PF01535--PPR
PF13041--PPR_2

Gene Ontology

GO:0009507--C:chloroplast
GO:0043231--C:intracellular membrane-bounded organelle
GO:0004519--F:endonuclease activity
GO:0003723--F:RNA binding
GO:0008270--F:zinc ion binding
GO:0009451--P:RNA modification

KEGG

ath:AT5G52850

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002827	Amborella trichopoda	34.08	1.00e-63	236.00
IUUC-Apl-003607	Anas platyrhynchos	31.76	4.00e-03	33.90
IUUC-Aca-005063	Anolis carolinensis	33.78	4.00e-03	33.90
IUUC-Bta-012817	Bos taurus	32.94	2.00e-03	35.00
IUUC-Bdi-014037	Brachypodium distachyon	27.09	2.00e-34	139.00
IUUC-Bol-016246	Brassica oleracea	30.46	9.00e-125	440.00
IUUC-Cja-019605	Callithrix jacchus	32.94	2.00e-03	35.00
IUUC-Cfa-021231	Canis familiaris	32.94	2.00e-03	35.00
IUUC-Cpo-022003	Cavia porcellus	32.94	2.00e-03	35.00
IUUC-Csa-023511	Chlorocebus sabaeus	32.94	2.00e-03	35.00
IUUC-Dno-029003	Dasypus novemcinctus	31.76	4.00e-03	34.30
IUUC-Fca-036317	Felis catus	33.78	6.00e-03	33.50
IUUC-Gga-041258	Gallus gallus	31.76	3.00e-03	34.30
IUUC-Ggo-045620	Gorilla gorilla	32.94	2.00e-03	35.00
IUUC-Hsa-046909	Homo sapiens	32.94	2.00e-03	35.00
IUUC-Itr-048023	Ictidomys tridecemlineatus	32.94	2.00e-03	35.00
IUUC-Lch-049510	Latimeria chalumnae	35.56	1.50e-01	28.90
IUUC-Lpe-050946	Leersia perrieri	29.20	3.00e-92	332.00
IUUC-Loc-052863	Lepisosteus oculatus	38.64	4.80e-02	30.40
IUUC-Laf-054136	Loxodonta africana	32.94	2.00e-03	35.00
IUUC-Mcc-055383	Macaca mulatta	32.94	2.00e-03	35.00
IUUC-Meu-056153	Macropus eugenii	32.94	2.00e-03	35.00
IUUC-Mtr-058695	Medicago truncatula	28.51	3.00e-95	342.00
IUUC-Mmr-061185	Microcebus murinus	32.94	2.00e-03	35.00
IUUC-Mdo-061819	Monodelphis domestica	32.94	9.00e-04	36.20
IUUC-Mmu-064231	Mus musculus	32.94	2.00e-03	35.40
IUUC-Mpu-066691	Mustela putorius furo	32.94	2.00e-03	35.00
IUUC-Mlu-067673	Myotis lucifugus	32.94	2.00e-03	35.40
IUUC-Oba-075207	Oryza barthii	32.29	2.00e-54	206.00
IUUC-Ome-081873	Oryza meridionalis	33.74	1.00e-55	210.00
IUUC-Oga-088041	Otolemur garnettii	32.94	2.00e-03	35.00
IUUC-Oar-089646	Ovis aries	32.94	2.00e-03	35.40
IUUC-Ptr-091502	Pan troglodytes	32.94	2.00e-03	35.00
IUUC-Pan-091934	Papio anubis	32.94	2.00e-03	35.00
IUUC-Pab-098554	Pongo abelii	32.94	2.00e-03	35.00
IUUC-Pop-100074	Populus trichocarpa	25.13	3.00e-13	68.20
IUUC-Ppe-101554	Prunus persica	27.05	5.00e-72	265.00
IUUC-Rno-105874	Rattus norvegicus	32.94	2.00e-03	35.40
IUUC-Sha-107151	Sarcophilus harrisii	32.94	2.00e-03	35.00
IUUC-Smo-109647	Selaginella moellendorffii	26.05	3.00e-75	275.00
IUUC-Tgu-117151	Taeniopygia guttata	31.76	2.00e-03	34.70
IUUC-Tca-121040	Theobroma cacao	26.81	2.00e-105	376.00
IUUC-Tur-126385	Triticum urartu	32.28	6.00e-92	331.00
IUUC-Ttr-129065	Tursiops truncatus	32.94	2.00e-03	35.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence