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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007339
Ensembl Protein ID AT1G43850.2
UniProt Accession Q8W234; Q8GXE8; Q9MAR3; SEUSS_ARATH
Genbank Protein ID AAL57277.1; AAF63115.1; AEE32000.1; AEE32001.1; BAC42895.1
Protein Name Transcriptional corepressor SEUSS
Genbank Nucleotide ID AF378782; AC006423; CP002684; CP002684; AK118277
Gene Name SEU; At1g43850; F28H19.10
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G43850 AT1G43850.2 AT1G43850.2
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
PINAHINTMentha
Post-translational Modifications (PTMs)
CPLM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/U-box 24.12 2.00e-05 48.50 IUUC-Dme-031667
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     DNA-binding adapter subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and LEUNIG to repress AGAMOUS expression. In association with LUG, regulates petal shape through AGAMOUS-independent mechanisms. Controls cell division during petal development and enable the proper patterning of petal blade vasculature. Required for the proper elaboration of petal polarity along the adaxial/abaxial axis. May act through direct or indirect regulation of PHABULOSA and YAB1 and thus regulate cellular proliferation within the developing petal blade. In association with AINTEGUMENTA (ANT), coordinates patterning cues and cellular proliferation along the three positional axes of the developing gynoecium. Required for the development of the medial ridge and subsequent ovule initiation.
DNA-binding adapter subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and LEUNIG to repress AGAMOUS expression. In association with LUG, regulates petal shape through AGAMOUS-independent mechanisms. Controls cell division during petal development and enable the proper patterning of petal blade vasculature. Required for the proper elaboration of petal polarity along the adaxial/abaxial axis. May act through direct or indirect regulation of PHABULOSA and YAB1 and thus regulate cellular proliferation within the developing petal blade. In association with AINTEGUMENTA (ANT), coordinates patterning cues and cellular proliferation along the three positional axes of the developing gynoecium. Required for the development of the medial ridge and subsequent ovule initiation.
Protein Sequence
(Fasta)
MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI 60
SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS FNASSMVSPR SSGQVQGQQF 120
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Protein Fasta Sequence



>IUUC-Ath-007339|E3,U-box|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
GATTGTGATT ACAAAAAAAA AACATTTCTA GGGCATGTCA TTGACTTCCT TTGAAGAAGA 60
AGAAGAAGAG AGAGAGAGAC TGAAAAAGAA AAAGTAAGAA AGGGAATGAA ATAAATCCGA 120
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Nucleotide Fasta Sequence



>IUUC-Ath-007339|E3,U-box|Arabidopsis thaliana
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Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0217--Developmental protein
KW-0221--Differentiation
KW-0287--Flowering
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR029005--LIM-bd/SEUSS

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0060090--F:binding, bridging
GO:0003677--F:DNA binding
GO:0046982--F:protein heterodimerization activity
GO:0030154--P:cell differentiation
GO:0006974--P:cellular response to DNA damage stimulus
GO:0071217--P:cellular response to external biotic stimulus
GO:0009793--P:embryo development ending in seed dormancy
GO:0048467--P:gynoecium development
GO:0048481--P:plant ovule development
GO:0009909--P:regulation of flower development
GO:0006355--P:regulation of transcription, DNA-templated
GO:0009733--P:response to auxin
GO:0009617--P:response to bacterium
GO:0046898--P:response to cycloheximide
GO:0009620--P:response to fungus
GO:0001666--P:response to hypoxia
GO:0009624--P:response to nematode
GO:0006979--P:response to oxidative stress
GO:0010272--P:response to silver ion
GO:0006351--P:transcription, DNA-templated

KEGG ath:AT1G43850
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000177 Aegilops tauschii 50.91 4.00e-49 189.00
IUUC-Aml-002031 Ailuropoda melanoleuca 24.49 2.00e-07 50.10
IUUC-Atr-003083 Amborella trichopoda 62.18 3.00e-103 369.00
IUUC-Apl-004210 Anas platyrhynchos 25.52 1.00e-06 46.60
IUUC-Aca-005241 Anolis carolinensis 25.52 3.00e-07 48.90
IUUC-Aly-006204 Arabidopsis lyrata 92.95 0.00e+00 1200.00
IUUC-Acl-008255 Aspergillus clavatus 20.73 1.00e-06 47.80
IUUC-Afl-008469 Aspergillus flavus 20.59 5.00e-07 49.30
IUUC-Afu-009010 Aspergillus fumigatus 21.43 2.00e-05 43.90
IUUC-Aor-010071 Aspergillus oryzae 20.59 3.00e-07 50.10
IUUC-Ate-010596 Aspergillus terreus 21.15 2.00e-07 50.40
IUUC-Ame-010910 Astyanax mexicanus 25.52 2.00e-07 49.70
IUUC-Bgr-012180 Blumeria graminis 22.31 9.00e-11 61.60
IUUC-Bta-012596 Bos taurus 25.26 2.00e-07 49.30
IUUC-Bci-013927 Botrytis cinerea 20.15 1.00e-06 47.80
IUUC-Bol-015721 Brassica oleracea 70.80 0.00e+00 906.00
IUUC-Bra-017183 Brassica rapa 72.32 0.00e+00 926.00
IUUC-Cja-019586 Callithrix jacchus 24.87 2.00e-07 49.30
IUUC-Cfa-021188 Canis familiaris 24.49 2.00e-07 50.10
IUUC-Cpo-022350 Cavia porcellus 24.49 2.00e-07 49.30
IUUC-Csa-023816 Chlorocebus sabaeus 24.49 2.00e-07 49.70
IUUC-Cin-025721 Ciona intestinalis 24.71 5.00e-09 54.70
IUUC-Csv-026065 Ciona savignyi 25.29 4.00e-09 54.70
IUUC-Dre-027356 Danio rerio 24.75 2.00e-06 46.60
IUUC-Dno-029918 Dasypus novemcinctus 24.49 2.00e-07 49.30
IUUC-Dor-030634 Dipodomys ordii 24.49 3.00e-07 48.90
IUUC-Dme-031667 Drosophila melanogaster 23.84 8.00e-07 48.10
IUUC-Ete-032246 Echinops telfairi 25.26 2.00e-07 49.30
IUUC-Eca-034015 Equus caballus 25.00 2.00e-07 49.70
IUUC-Eeu-034902 Erinaceus europaeus 24.49 3.00e-07 48.90
IUUC-Fca-035903 Felis catus 24.49 2.00e-07 49.70
IUUC-Fal-037407 Ficedula albicollis 24.87 6.00e-07 47.80
IUUC-Gmo-039466 Gadus morhua 25.52 3.00e-07 48.90
IUUC-Ggr-040030 Gaeumannomyces graminis 22.75 1.00e-07 51.60
IUUC-Gga-040214 Gallus gallus 25.52 3.00e-07 49.30
IUUC-Gac-042214 Gasterosteus aculeatus 25.52 3.00e-07 49.30
IUUC-Gma-042794 Glycine max 67.83 4.00e-155 541.00
IUUC-Ggo-044988 Gorilla gorilla 24.56 4.00e-07 48.10
IUUC-Hsa-046092 Homo sapiens 24.87 4.00e-07 48.10
IUUC-Itr-047934 Ictidomys tridecemlineatus 24.49 2.00e-07 49.70
IUUC-Lch-049895 Latimeria chalumnae 35.90 5.00e-03 34.30
IUUC-Lpe-050806 Leersia perrieri 68.82 1.00e-100 360.00
IUUC-Loc-052845 Lepisosteus oculatus 25.52 2.00e-07 49.70
IUUC-Lma-053090 Leptosphaeria maculans 20.38 4.00e-03 36.20
IUUC-Laf-054538 Loxodonta africana 23.84 2.00e-06 45.80
IUUC-Mcc-055116 Macaca mulatta 25.00 1.00e-06 46.20
IUUC-Meu-056777 Macropus eugenii 23.47 2.00e-06 46.20
IUUC-Mpo-057376 Magnaporthe poae 22.44 1.00e-06 48.50
IUUC-Mtr-058142 Medicago truncatula 63.61 2.00e-177 615.00
IUUC-Mga-059716 Meleagris gallopavo 24.87 8.00e-07 47.40
IUUC-Mmr-060649 Microcebus murinus 24.87 4.00e-07 48.10
IUUC-Mdo-062535 Monodelphis domestica 24.56 5.00e-07 48.10
IUUC-Mmu-064036 Mus musculus 25.00 2.00e-07 49.70
IUUC-Mac-065338 Musa acuminata 53.53 8.00e-145 507.00
IUUC-Mpu-065719 Mustela putorius furo 24.49 2.00e-07 49.70
IUUC-Mlu-067219 Myotis lucifugus 23.98 1.00e-06 47.00
IUUC-Nfi-068308 Neosartorya fischeri 21.05 3.00e-05 43.10
IUUC-Ncr-068691 Neurospora crassa 26.85 2.00e-08 53.90
IUUC-Nle-068983 Nomascus leucogenys 24.56 4.00e-07 48.50
IUUC-Opr-070467 Ochotona princeps 24.49 3.00e-07 48.90
IUUC-Ont-071566 Oreochromis niloticus 25.52 2.00e-07 49.30
IUUC-Oan-073368 Ornithorhynchus anatinus 25.39 9.00e-07 47.00
IUUC-Ocu-074854 Oryctolagus cuniculus 25.00 2.00e-07 49.30
IUUC-Ome-081687 Oryza meridionalis 46.75 6.00e-63 234.00
IUUC-Ola-086364 Oryzias latipes 25.52 3.00e-07 48.90
IUUC-Oga-088235 Otolemur garnettii 24.56 4.00e-07 48.10
IUUC-Oar-089547 Ovis aries 24.49 1.00e-07 50.40
IUUC-Ptr-091423 Pan troglodytes 24.56 4.00e-07 48.50
IUUC-Pan-092378 Papio anubis 24.49 3.00e-07 48.90
IUUC-Psi-093638 Pelodiscus sinensis 24.56 5.00e-07 48.10
IUUC-Pno-095027 Phaeosphaeria nodorum 22.35 5.00e-04 38.90
IUUC-Pfo-096031 Poecilia formosa 25.52 7.00e-07 47.80
IUUC-Pab-097886 Pongo abelii 24.56 4.00e-07 48.50
IUUC-Pop-099430 Populus trichocarpa 62.68 2.00e-167 582.00
IUUC-Pca-101138 Procavia capensis 24.49 3.00e-07 48.90
IUUC-Ppe-101293 Prunus persica 65.64 2.00e-170 592.00
IUUC-Pva-103215 Pteropus vampyrus 25.00 2.00e-07 49.70
IUUC-Pte-104238 Pyrenophora teres 22.16 7.90e-02 31.20
IUUC-Rno-105968 Rattus norvegicus 25.26 2.00e-07 49.70
IUUC-Sha-107595 Sarcophilus harrisii 23.47 1.00e-06 47.00
IUUC-Sja-107950 Schizosaccharomyces japonicus 24.01 2.00e-12 66.20
IUUC-Ssl-108527 Sclerotinia sclerotiorum 19.49 8.00e-07 48.50
IUUC-Smo-109552 Selaginella moellendorffii 53.58 1.00e-86 314.00
IUUC-Sly-110873 Solanum lycopersicum 59.61 3.00e-160 558.00
IUUC-Stu-112586 Solanum tuberosum 43.65 5.00e-54 205.00
IUUC-Sre-115143 Sporisorium reilianum 26.76 5.00e-08 52.80
IUUC-Ssc-115755 Sus scrofa 24.49 3.00e-07 48.90
IUUC-Tgu-117326 Taeniopygia guttata 24.87 5.00e-07 48.10
IUUC-Tru-117858 Takifugu rubripes 25.73 1.00e-06 47.00
IUUC-Tsy-119296 Tarsius syrichta 27.66 4.00e-05 42.00
IUUC-Tni-119822 Tetraodon nigroviridis 23.98 1.00e-05 43.50
IUUC-Tca-120935 Theobroma cacao 70.18 0.00e+00 640.00
IUUC-Tvi-122610 Trichoderma virens 37.21 3.00e-01 29.30
IUUC-Tbe-127366 Tupaia belangeri 24.35 5.00e-07 48.10
IUUC-Ttr-128484 Tursiops truncatus 24.03 7.00e-06 44.30
IUUC-Vpa-130304 Vicugna pacos 25.47 7.00e-07 47.00
IUUC-Vvi-131560 Vitis vinifera 63.13 2.00e-156 546.00
IUUC-Xtr-132062 Xenopus tropicalis 25.52 5.00e-07 48.10
IUUC-Xma-134288 Xiphophorus maculatus 25.52 4.00e-07 48.50
IUUC-Yli-134374 Yarrowia lipolytica 24.39 3.00e-13 69.70
IUUC-Zma-135310 Zea mays 77.00 7.00e-131 460.00
Created Date 25-Jun-2017

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