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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Sce-106369
Ensembl Protein ID YDR324C
UniProt Accession Q06679; D6VSV7; UTP4_YEAST
Genbank Protein ID AAB64760.1; DAA12167.1
Protein Name U3 small nucleolar RNA-associated protein 4; U three protein 4; U3 protein 4 required for transcription; t-UTP4
Genbank Nucleotide ID U32517; BK006938
Gene Name UTP4; YDR324C
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
YDR324C YDR324C YDR324C
Annotation
mRNA Expression
GEOFFGED
Protein-protein Interaction
IIDiRefIndexHINTMentha
Post-translational Modifications (PTMs)
CPLMdbPAFBioGRID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 9.30e-09 33.8 188 214
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 4    dsvtclaf.sdtllvsGsdDgtikvWD 29
           ++v  la+  d++++ G+ Dg i++W+
   Q: 188  ARVLTLAWkKDDFVIGGCSDGRIRIWS 214
           56889***9889**************8 PP
   
Organism Saccharomyces cerevisiae
Functional Description
(View)

Functional Description


     Involved in nucleolar processing of pre-18S ribosomal RNA. Required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs).
 Involved in nucleolar processing of pre-18S ribosomal RNA. Required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs).
Protein Sequence
(Fasta)
MSSSLLSVLK EKSRSLKIRN KPVKMTSQER MIVHRCRFVD FTPATITSLA FSHKSNINKL 60
TPSDLRLAIG RSNGNIEIWN PRNNWFQEMV IEGGKDRSIE GLCWSNVNGE SLRLFSIGGS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Sce-106369|E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGAGCTCAT CGCTACTTTC AGTTTTAAAA GAAAAGTCAA GAAGCCTGAA AATACGAAAC 60
AAACCGGTGA AGATGACCAG TCAGGAAAGG ATGATAGTGC ATAGATGCAG ATTTGTGGAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Sce-106369|E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0804--Transcription
KW-0853--WD repeat
Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0030686--C:90S preribosome
GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0032040--C:small-subunit processome
GO:0034455--C:t-UTP complex
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0045943--P:positive regulation of transcription from RNA polymerase I promoter
GO:0031167--P:rRNA methylation
GO:0006351--P:transcription, DNA-templated
KEGG sce:YDR324C
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001161 Aegilops tauschii 24.96 1.00e-27 116.00
IUUC-Aml-001310 Ailuropoda melanoleuca 23.70 2.00e-45 174.00
IUUC-Atr-003076 Amborella trichopoda 22.81 2.00e-20 92.00
IUUC-Apl-003367 Anas platyrhynchos 26.22 2.00e-10 56.60
IUUC-Aca-004429 Anolis carolinensis 25.59 2.00e-33 134.00
IUUC-Aly-006271 Arabidopsis lyrata 23.37 6.00e-24 103.00
IUUC-Ath-007331 Arabidopsis thaliana 23.16 2.00e-23 102.00
IUUC-Ago-007843 Ashbya gossypii 55.93 0.00e+00 880.00
IUUC-Acl-008229 Aspergillus clavatus 35.03 1.00e-74 272.00
IUUC-Afl-008438 Aspergillus flavus 28.66 6.00e-78 283.00
IUUC-Afu-008910 Aspergillus fumigatus 32.16 3.00e-71 261.00
IUUC-Ani-009321 Aspergillus nidulans 27.34 2.00e-67 248.00
IUUC-Ang-009592 Aspergillus niger 29.36 7.00e-77 280.00
IUUC-Aor-010220 Aspergillus oryzae 29.58 8.00e-78 283.00
IUUC-Ate-010317 Aspergillus terreus 34.01 3.00e-74 271.00
IUUC-Ame-010957 Astyanax mexicanus 24.55 6.00e-41 160.00
IUUC-Bgr-012057 Blumeria graminis 33.23 1.00e-84 305.00
IUUC-Bta-012473 Bos taurus 22.64 3.00e-47 181.00
IUUC-Bdi-014203 Brachypodium distachyon 23.70 3.00e-34 138.00
IUUC-Bol-016163 Brassica oleracea 23.40 6.00e-30 124.00
IUUC-Bra-017482 Brassica rapa 23.74 8.00e-30 123.00
IUUC-Cja-019942 Callithrix jacchus 23.21 2.00e-44 171.00
IUUC-Cfa-020549 Canis familiaris 25.40 4.00e-42 163.00
IUUC-Cpo-022088 Cavia porcellus 24.03 8.00e-41 159.00
IUUC-Csa-023773 Chlorocebus sabaeus 23.59 7.00e-46 176.00
IUUC-Cho-024302 Choloepus hoffmanni 21.24 2.00e-22 98.60
IUUC-Cin-025384 Ciona intestinalis 28.10 3.00e-50 191.00
IUUC-Dre-027460 Danio rerio 23.41 6.00e-40 157.00
IUUC-Dno-029594 Dasypus novemcinctus 23.25 4.00e-41 160.00
IUUC-Dor-030564 Dipodomys ordii 33.70 7.00e-25 107.00
IUUC-Dse-031179 Dothistroma septosporum 31.55 8.00e-64 236.00
IUUC-Dme-031603 Drosophila melanogaster 23.58 4.00e-27 114.00
IUUC-Ete-032655 Echinops telfairi 23.04 5.00e-38 150.00
IUUC-Eca-033838 Equus caballus 24.47 1.00e-47 182.00
IUUC-Eeu-034548 Erinaceus europaeus 23.68 4.00e-42 164.00
IUUC-Fca-035715 Felis catus 24.10 7.00e-46 176.00
IUUC-Fal-037394 Ficedula albicollis 22.66 2.00e-33 135.00
IUUC-Gmo-039235 Gadus morhua 23.40 4.00e-34 137.00
IUUC-Ggr-040043 Gaeumannomyces graminis 31.88 1.00e-56 212.00
IUUC-Gga-041172 Gallus gallus 24.11 6.00e-49 187.00
IUUC-Gac-042466 Gasterosteus aculeatus 25.72 4.00e-45 174.00
IUUC-Gma-044222 Glycine max 21.84 4.00e-26 111.00
IUUC-Ggo-045416 Gorilla gorilla 23.27 3.00e-39 154.00
IUUC-Hsa-046115 Homo sapiens 23.82 3.00e-40 158.00
IUUC-Hvu-047229 Hordeum vulgare 23.19 2.00e-27 115.00
IUUC-Itr-048015 Ictidomys tridecemlineatus 24.67 1.00e-45 176.00
IUUC-Kpa-049370 Komagataella pastoris 39.82 9.00e-146 508.00
IUUC-Lch-050153 Latimeria chalumnae 29.91 3.00e-45 174.00
IUUC-Lpe-051220 Leersia perrieri 23.59 7.00e-33 134.00
IUUC-Loc-052617 Lepisosteus oculatus 25.61 2.00e-48 185.00
IUUC-Laf-053613 Loxodonta africana 23.08 1.00e-44 172.00
IUUC-Mcc-055707 Macaca mulatta 23.80 2.00e-41 161.00
IUUC-Meu-056800 Macropus eugenii 20.83 2.00e-13 68.90
IUUC-Mor-057245 Magnaporthe oryzae 31.91 1.00e-47 182.00
IUUC-Mpo-057446 Magnaporthe poae 31.52 1.00e-55 209.00
IUUC-Mtr-058748 Medicago truncatula 22.19 4.00e-25 107.00
IUUC-Mga-060018 Meleagris gallopavo 24.05 3.00e-46 177.00
IUUC-Mmr-061115 Microcebus murinus 25.26 3.00e-45 174.00
IUUC-Mdo-062235 Monodelphis domestica 24.43 2.00e-47 181.00
IUUC-Mmu-063158 Mus musculus 24.83 1.00e-46 179.00
IUUC-Mac-065380 Musa acuminata 22.17 7.00e-30 124.00
IUUC-Mpu-065805 Mustela putorius furo 24.07 2.00e-45 175.00
IUUC-Mlu-066951 Myotis lucifugus 24.27 5.00e-46 177.00
IUUC-Nfi-068295 Neosartorya fischeri 33.60 1.00e-71 262.00
IUUC-Ncr-068880 Neurospora crassa 31.91 2.00e-62 232.00
IUUC-Nle-069657 Nomascus leucogenys 24.11 2.00e-46 178.00
IUUC-Opr-070250 Ochotona princeps 22.93 8.00e-44 169.00
IUUC-Ont-072642 Oreochromis niloticus 28.19 8.00e-42 163.00
IUUC-Ocu-074741 Oryctolagus cuniculus 24.77 3.00e-46 177.00
IUUC-Oba-074974 Oryza barthii 22.42 6.00e-31 127.00
IUUC-Obr-076586 Oryza brachyantha 23.12 1.00e-29 122.00
IUUC-Ogl-077782 Oryza glaberrima 23.00 2.00e-34 139.00
IUUC-Ogu-078333 Oryza glumaepatula 21.58 2.00e-26 112.00
IUUC-Oin-079852 Oryza indica 23.14 3.00e-35 141.00
IUUC-Olo-080370 Oryza longistaminata 23.54 2.00e-26 112.00
IUUC-Ome-081442 Oryza meridionalis 22.45 5.00e-31 127.00
IUUC-Oni-082341 Oryza nivara 21.69 7.00e-27 114.00
IUUC-Opu-083824 Oryza punctata 22.62 4.00e-32 130.00
IUUC-Oru-084827 Oryza rufipogon 22.42 4.00e-31 128.00
IUUC-Osa-085742 Oryza sativa 23.00 2.00e-34 139.00
IUUC-Ola-086466 Oryzias latipes 30.20 4.00e-49 187.00
IUUC-Olu-087761 Ostreococcus lucimarinus 25.75 5.00e-32 130.00
IUUC-Oga-088721 Otolemur garnettii 29.04 3.00e-42 164.00
IUUC-Oar-089532 Ovis aries 22.47 1.00e-44 172.00
IUUC-Ptr-091604 Pan troglodytes 23.87 4.00e-45 174.00
IUUC-Pan-092060 Papio anubis 28.13 3.00e-40 157.00
IUUC-Psi-093070 Pelodiscus sinensis 24.05 8.00e-43 166.00
IUUC-Pma-094201 Petromyzon marinus 25.52 2.00e-38 150.00
IUUC-Pno-094924 Phaeosphaeria nodorum 23.42 3.00e-29 121.00
IUUC-Ppa-095599 Physcomitrella patens 29.19 2.00e-32 132.00
IUUC-Pfo-097207 Poecilia formosa 27.30 6.00e-47 180.00
IUUC-Pab-097746 Pongo abelii 24.03 5.00e-47 180.00
IUUC-Pop-099669 Populus trichocarpa 20.75 1.00e-25 109.00
IUUC-Pca-100562 Procavia capensis 20.00 8.00e-16 76.60
IUUC-Ppe-101747 Prunus persica 22.59 3.00e-26 112.00
IUUC-Pva-103054 Pteropus vampyrus 24.23 9.00e-46 176.00
IUUC-Pte-104064 Pyrenophora teres 33.96 8.00e-66 243.00
IUUC-Pyt-104595 Pyrenophora triticirepentis 33.90 1.00e-68 253.00
IUUC-Rno-105155 Rattus norvegicus 23.57 3.00e-44 171.00
IUUC-Sha-107149 Sarcophilus harrisii 24.01 1.00e-48 186.00
IUUC-Sja-107777 Schizosaccharomyces japonicus 34.95 1.00e-129 455.00
IUUC-Spo-108372 Schizosaccharomyces pombe 35.82 4.00e-136 476.00
IUUC-Ssl-108650 Sclerotinia sclerotiorum 34.22 7.00e-75 273.00
IUUC-Smo-109670 Selaginella moellendorffii 22.80 2.00e-30 125.00
IUUC-Sit-110454 Setaria italica 23.01 4.00e-36 144.00
IUUC-Sly-111875 Solanum lycopersicum 22.68 9.00e-29 120.00
IUUC-Stu-112275 Solanum tuberosum 22.59 1.00e-27 116.00
IUUC-Sar-113254 Sorex araneus 33.15 8.00e-25 106.00
IUUC-Sbi-114624 Sorghum bicolor 23.51 4.00e-31 127.00
IUUC-Sre-114985 Sporisorium reilianum 23.63 2.00e-19 89.40
IUUC-Tgu-117407 Taeniopygia guttata 26.89 2.00e-34 138.00
IUUC-Tru-118733 Takifugu rubripes 26.51 7.00e-48 183.00
IUUC-Tsy-119213 Tarsius syrichta 27.79 7.00e-28 116.00
IUUC-Tni-120894 Tetraodon nigroviridis 31.02 1.00e-38 150.00
IUUC-Tca-121606 Theobroma cacao 25.88 1.00e-23 103.00
IUUC-Tre-121958 Trichoderma reesei 30.13 9.00e-67 246.00
IUUC-Tvi-122290 Trichoderma virens 30.55 1.00e-65 242.00
IUUC-Tae-125538 Triticum aestivum 23.97 2.00e-33 135.00
IUUC-Tme-126995 Tuber melanosporum 37.74 4.00e-76 277.00
IUUC-Tbe-127605 Tupaia belangeri 28.73 6.00e-15 73.90
IUUC-Ttr-128720 Tursiops truncatus 24.07 2.00e-44 172.00
IUUC-Uma-129564 Ustilago maydis 26.05 3.00e-30 125.00
IUUC-Vpa-130412 Vicugna pacos 31.37 1.00e-31 129.00
IUUC-Vvi-131256 Vitis vinifera 23.63 5.00e-20 91.30
IUUC-Xtr-131828 Xenopus tropicalis 24.70 1.00e-42 166.00
IUUC-Xma-133394 Xiphophorus maculatus 27.18 5.00e-45 173.00
IUUC-Yli-134565 Yarrowia lipolytica 37.06 5.00e-130 456.00
Created Date 25-Jun-2017

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