iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Nfi-068260

Ensembl Protein ID

CADNFIAP00009609

UniProt Accession

A1CXL0; YTM1_NEOFI

Genbank Protein ID

EAW25362.1

Protein Name

Ribosome biogenesis protein ytm1

Genbank Nucleotide ID

DS027685

Gene Name

NFIA_108560; ytm1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CADNFIAG00009849	CADNFIAT00009849	CADNFIAP00009609

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.50e-28	94.4	384	418

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tl.lvsGsdDgtikvWDlrt 32
           gHt+ v +la  +  t+ l+sGs+Dgt+++WD+r 
   Q: 384  GHTNAVVSLARdPHsTYgLISGSHDGTCRIWDIRA 418
           899999999988555778**************875 PP

Organism

Neosartorya fischeri

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MNDGSDFDAT ATSSAAQRQV RVQLTSKQED IALPDNAGPI LVPTSLRRYA LSTLVNNLLG 60
NDKPIPFEFL INGTFLRTSI DEYLTANGIS AETTLEIEYV RALIPPLHIA SFQHDDWVSS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAACGACG GCTCGGATTT TGATGCTACT GCGACCTCGT CTGCTGCCCA GCGACAGGTC 60
CGCGTGCAGC TCACCAGCAA ACAGGAAGAT ATTGCGCTGC CAGATAACGC TGGACCCATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0051276--P:chromosome organization
GO:0042273--P:ribosomal large subunit biogenesis
GO:0006364--P:rRNA processing

KEGG

nfi:NFIA_108560

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	32.07	5.00e-50	189.00
IUUC-Aml-001997	Ailuropoda melanoleuca	29.74	4.00e-38	150.00
IUUC-Atr-002544	Amborella trichopoda	30.10	5.00e-43	166.00
IUUC-Apl-003981	Anas platyrhynchos	30.68	1.00e-40	159.00
IUUC-Aca-004370	Anolis carolinensis	30.00	1.00e-43	169.00
IUUC-Aly-006455	Arabidopsis lyrata	30.21	3.00e-47	181.00
IUUC-Ath-006669	Arabidopsis thaliana	32.28	1.00e-43	169.00
IUUC-Ago-007864	Ashbya gossypii	42.83	9.00e-104	368.00
IUUC-Acl-008177	Aspergillus clavatus	91.19	0.00e+00	837.00
IUUC-Afl-008617	Aspergillus flavus	87.91	0.00e+00	792.00
IUUC-Afu-008752	Aspergillus fumigatus	97.34	0.00e+00	818.00
IUUC-Ani-009136	Aspergillus nidulans	84.95	0.00e+00	764.00
IUUC-Ang-009701	Aspergillus niger	87.53	0.00e+00	752.00
IUUC-Aor-009884	Aspergillus oryzae	88.11	0.00e+00	797.00
IUUC-Ate-010472	Aspergillus terreus	88.79	2.00e-151	526.00
IUUC-Ame-011432	Astyanax mexicanus	28.54	2.00e-44	171.00
IUUC-Bgr-012218	Blumeria graminis	57.58	6.00e-149	518.00
IUUC-Bta-012829	Bos taurus	28.54	5.00e-38	150.00
IUUC-Bci-013953	Botrytis cinerea	58.37	1.00e-158	551.00
IUUC-Bdi-014351	Brachypodium distachyon	32.62	9.00e-46	176.00
IUUC-Bol-016190	Brassica oleracea	33.42	1.00e-46	178.00
IUUC-Bra-016988	Brassica rapa	33.08	4.00e-46	177.00
IUUC-Cel-018569	Caenorhabditis elegans	24.88	4.00e-24	104.00
IUUC-Cja-019468	Callithrix jacchus	29.06	8.00e-39	152.00
IUUC-Cfa-020471	Canis familiaris	27.85	1.00e-34	139.00
IUUC-Cpo-022260	Cavia porcellus	29.02	2.00e-37	148.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	33.09	1.00e-48	185.00
IUUC-Csa-023989	Chlorocebus sabaeus	29.30	8.00e-38	149.00
IUUC-Cho-024426	Choloepus hoffmanni	27.33	3.00e-28	117.00
IUUC-Cin-025789	Ciona intestinalis	26.57	1.00e-35	142.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	51.83	2.00e-35	140.00
IUUC-Cne-027063	Cryptococcus neoformans	26.97	3.00e-34	137.00
IUUC-Dre-027907	Danio rerio	29.74	1.00e-44	172.00
IUUC-Dno-029225	Dasypus novemcinctus	29.06	2.00e-38	151.00
IUUC-Dor-031082	Dipodomys ordii	26.77	3.00e-16	77.80
IUUC-Dse-031308	Dothistroma septosporum	51.29	7.00e-133	465.00
IUUC-Dme-032189	Drosophila melanogaster	27.25	2.00e-37	148.00
IUUC-Ete-032247	Echinops telfairi	27.54	7.00e-32	129.00
IUUC-Eca-034285	Equus caballus	29.02	2.00e-38	151.00
IUUC-Eeu-035322	Erinaceus europaeus	26.15	1.00e-32	132.00
IUUC-Fca-036114	Felis catus	29.74	9.00e-39	152.00
IUUC-Fal-036891	Ficedula albicollis	30.23	1.00e-34	139.00
IUUC-Fox-037965	Fusarium oxysporum	52.11	7.00e-133	465.00
IUUC-Fso-038244	Fusarium solani	52.08	4.00e-131	459.00
IUUC-Gmo-039040	Gadus morhua	29.51	2.00e-46	177.00
IUUC-Ggr-040093	Gaeumannomyces graminis	47.06	1.00e-103	368.00
IUUC-Gga-040610	Gallus gallus	30.77	9.00e-43	166.00
IUUC-Gac-042117	Gasterosteus aculeatus	28.38	1.00e-42	165.00
IUUC-Gma-043756	Glycine max	34.53	3.00e-51	194.00
IUUC-Ggo-045179	Gorilla gorilla	29.78	7.00e-40	156.00
IUUC-Hsa-046114	Homo sapiens	29.54	1.00e-38	152.00
IUUC-Hvu-047331	Hordeum vulgare	31.62	3.00e-40	157.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	28.57	6.00e-38	149.00
IUUC-Kpa-049304	Komagataella pastoris	44.81	1.00e-113	401.00
IUUC-Lch-050655	Latimeria chalumnae	27.70	5.00e-30	123.00
IUUC-Lpe-051675	Leersia perrieri	30.74	3.00e-46	177.00
IUUC-Loc-052868	Lepisosteus oculatus	29.41	1.00e-42	165.00
IUUC-Lma-053258	Leptosphaeria maculans	54.80	2.00e-145	508.00
IUUC-Laf-053993	Loxodonta africana	28.81	4.00e-39	154.00
IUUC-Mcc-055128	Macaca mulatta	24.02	1.00e-23	102.00
IUUC-Meu-056501	Macropus eugenii	28.97	1.00e-33	135.00
IUUC-Mor-057114	Magnaporthe oryzae	51.87	9.00e-134	468.00
IUUC-Mpo-057463	Magnaporthe poae	46.45	3.00e-43	166.00
IUUC-Mtr-058367	Medicago truncatula	33.17	1.00e-44	172.00
IUUC-Mla-059107	Melampsora laricipopulina	30.08	4.00e-46	177.00
IUUC-Mga-059745	Meleagris gallopavo	30.77	3.00e-42	164.00
IUUC-Mvi-060362	Microbotryum violaceum	30.69	6.00e-46	176.00
IUUC-Mdo-062257	Monodelphis domestica	29.06	1.00e-40	158.00
IUUC-Mmu-063546	Mus musculus	29.51	2.00e-40	157.00
IUUC-Mac-065540	Musa acuminata	31.75	3.00e-43	167.00
IUUC-Mpu-066284	Mustela putorius furo	29.06	6.00e-39	153.00
IUUC-Mlu-067241	Myotis lucifugus	29.02	8.00e-39	152.00
IUUC-Ncr-068719	Neurospora crassa	55.21	5.00e-136	476.00
IUUC-Nle-068981	Nomascus leucogenys	29.78	1.00e-37	148.00
IUUC-Opr-071218	Ochotona princeps	26.83	2.00e-36	145.00
IUUC-Ont-071646	Oreochromis niloticus	28.38	1.00e-40	158.00
IUUC-Oan-073453	Ornithorhynchus anatinus	27.22	9.00e-46	176.00
IUUC-Ocu-074008	Oryctolagus cuniculus	28.54	2.00e-39	155.00
IUUC-Oba-075712	Oryza barthii	28.14	4.00e-35	140.00
IUUC-Obr-076721	Oryza brachyantha	31.43	1.00e-47	182.00
IUUC-Ogl-077229	Oryza glaberrima	31.70	3.00e-49	187.00
IUUC-Ogu-078977	Oryza glumaepatula	28.14	8.00e-35	139.00
IUUC-Oin-079683	Oryza indica	31.58	8.00e-49	186.00
IUUC-Olo-080291	Oryza longistaminata	30.18	1.00e-28	118.00
IUUC-Ome-081834	Oryza meridionalis	31.63	7.00e-49	186.00
IUUC-Oni-082507	Oryza nivara	30.21	1.00e-42	165.00
IUUC-Opu-083396	Oryza punctata	30.95	9.00e-47	179.00
IUUC-Oru-085220	Oryza rufipogon	30.21	9.00e-43	166.00
IUUC-Osa-085767	Oryza sativa	31.58	8.00e-49	186.00
IUUC-Ola-087420	Oryzias latipes	29.02	3.00e-43	167.00
IUUC-Olu-087740	Ostreococcus lucimarinus	28.28	6.00e-32	129.00
IUUC-Oga-088264	Otolemur garnettii	29.06	1.00e-36	145.00
IUUC-Oar-089335	Ovis aries	28.29	1.00e-37	149.00
IUUC-Ptr-091320	Pan troglodytes	29.54	1.00e-38	152.00
IUUC-Pan-092833	Papio anubis	29.30	3.00e-38	150.00
IUUC-Psi-093504	Pelodiscus sinensis	30.26	5.00e-40	156.00
IUUC-Pma-094189	Petromyzon marinus	28.57	2.00e-39	155.00
IUUC-Pno-094929	Phaeosphaeria nodorum	54.06	1.00e-142	497.00
IUUC-Ppa-095429	Physcomitrella patens	32.91	5.00e-55	206.00
IUUC-Pfo-096337	Poecilia formosa	29.67	9.00e-44	169.00
IUUC-Pab-097571	Pongo abelii	29.78	9.00e-39	152.00
IUUC-Pop-099977	Populus trichocarpa	30.00	1.00e-45	175.00
IUUC-Pca-100394	Procavia capensis	27.18	5.00e-30	123.00
IUUC-Ppe-101848	Prunus persica	33.18	2.00e-49	187.00
IUUC-Pva-102921	Pteropus vampyrus	27.14	2.00e-15	75.10
IUUC-Pgr-103637	Puccinia graminis	27.84	1.00e-49	188.00
IUUC-Ptt-103781	Puccinia triticina	29.19	1.00e-52	198.00
IUUC-Pte-104135	Pyrenophora teres	56.15	3.00e-137	481.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	54.62	1.00e-136	477.00
IUUC-Rno-105114	Rattus norvegicus	29.02	3.00e-39	154.00
IUUC-Sce-106401	Saccharomyces cerevisiae	42.19	4.00e-105	373.00
IUUC-Sha-107122	Sarcophilus harrisii	29.40	2.00e-34	138.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	38.14	4.00e-85	306.00
IUUC-Spo-108134	Schizosaccharomyces pombe	39.33	2.00e-87	313.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	58.16	2.00e-163	567.00
IUUC-Smo-108761	Selaginella moellendorffii	29.40	1.00e-41	161.00
IUUC-Sit-110354	Setaria italica	29.96	4.00e-47	180.00
IUUC-Sly-111178	Solanum lycopersicum	32.80	1.00e-47	181.00
IUUC-Stu-112778	Solanum tuberosum	31.91	3.00e-46	177.00
IUUC-Sar-113596	Sorex araneus	25.06	1.00e-26	112.00
IUUC-Sbi-114193	Sorghum bicolor	29.69	2.00e-43	167.00
IUUC-Sre-115002	Sporisorium reilianum	27.34	3.00e-35	141.00
IUUC-Ssc-116066	Sus scrofa	28.54	3.00e-37	147.00
IUUC-Tgu-117048	Taeniopygia guttata	30.96	1.00e-40	158.00
IUUC-Tni-119820	Tetraodon nigroviridis	26.96	1.00e-38	152.00
IUUC-Tca-121605	Theobroma cacao	31.57	9.00e-48	182.00
IUUC-Tre-121947	Trichoderma reesei	50.73	2.00e-132	464.00
IUUC-Tvi-122481	Trichoderma virens	50.83	5.00e-134	469.00
IUUC-Tae-123847	Triticum aestivum	32.07	5.00e-50	189.00
IUUC-Tur-126586	Triticum urartu	31.05	4.00e-44	170.00
IUUC-Tme-126900	Tuber melanosporum	46.36	8.00e-112	395.00
IUUC-Uma-129628	Ustilago maydis	26.43	4.00e-26	110.00
IUUC-Vpa-130260	Vicugna pacos	28.54	1.00e-38	152.00
IUUC-Vvi-131009	Vitis vinifera	34.05	2.00e-51	194.00
IUUC-Xtr-132083	Xenopus tropicalis	29.76	9.00e-44	169.00
IUUC-Xma-133094	Xiphophorus maculatus	28.32	8.00e-44	169.00
IUUC-Yli-134531	Yarrowia lipolytica	37.13	4.00e-73	267.00
IUUC-Zma-135509	Zea mays	30.97	9.00e-46	176.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence