iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bol-015446

Ensembl Protein ID

Bo3g034600.1

UniProt Accession

A0A0D3B5Y5; A0A0D3B5Y5_BRAOL

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bo3g034600	Bo3g034600.1	Bo3g034600.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	39.16	1.00e-49	194.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Brassica oleracea

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MAATNEHTVL QFVTPSSTAS TTTQVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI 60
LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV NPKEVIVGWY STGAGVNGGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGGCGA CGAACGAACA CACCGTCTTG CAATTCGTGA CTCCGTCATC GACGGCCTCC 60
ACAACCACCC AAGTGCTCAC AGCGCGAATC CACCCACTTG TTATCTTCAA CGTCTGCGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0003743--F:translation initiation factor activity
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	64.04	2.00e-96	345.00
IUUC-Aml-001527	Ailuropoda melanoleuca	39.16	6.00e-53	201.00
IUUC-Atr-002686	Amborella trichopoda	69.97	3.00e-107	380.00
IUUC-Apl-003977	Anas platyrhynchos	36.82	8.00e-41	159.00
IUUC-Aca-004335	Anolis carolinensis	38.78	7.00e-54	203.00
IUUC-Aly-005945	Arabidopsis lyrata	92.83	3.00e-142	497.00
IUUC-Ath-007045	Arabidopsis thaliana	92.15	3.00e-139	487.00
IUUC-Acl-008365	Aspergillus clavatus	38.83	2.00e-41	162.00
IUUC-Afl-008742	Aspergillus flavus	38.10	7.00e-41	160.00
IUUC-Afu-009030	Aspergillus fumigatus	39.05	4.00e-42	164.00
IUUC-Ani-009212	Aspergillus nidulans	38.10	2.00e-41	162.00
IUUC-Ang-009712	Aspergillus niger	38.10	5.00e-41	161.00
IUUC-Aor-009885	Aspergillus oryzae	38.46	4.00e-42	164.00
IUUC-Ate-010315	Aspergillus terreus	37.36	7.00e-40	157.00
IUUC-Ame-010801	Astyanax mexicanus	50.62	4.00e-20	91.70
IUUC-Bgr-011982	Blumeria graminis	37.18	2.00e-41	162.00
IUUC-Bta-012804	Bos taurus	39.16	6.00e-53	201.00
IUUC-Bci-013891	Botrytis cinerea	36.23	9.00e-34	137.00
IUUC-Bdi-014328	Brachypodium distachyon	66.92	1.00e-95	342.00
IUUC-Bra-016862	Brassica rapa	98.98	1.00e-152	531.00
IUUC-Cel-018171	Caenorhabditis elegans	28.08	5.00e-24	104.00
IUUC-Cja-019335	Callithrix jacchus	39.16	8.00e-53	200.00
IUUC-Cfa-020138	Canis familiaris	38.78	2.00e-52	199.00
IUUC-Cpo-022109	Cavia porcellus	36.53	4.00e-42	164.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	40.36	4.00e-55	207.00
IUUC-Csa-023994	Chlorocebus sabaeus	39.16	7.00e-53	200.00
IUUC-Cho-024351	Choloepus hoffmanni	35.52	1.00e-30	126.00
IUUC-Cin-025801	Ciona intestinalis	37.50	2.00e-47	182.00
IUUC-Csv-025805	Ciona savignyi	37.88	2.00e-47	182.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	33.57	1.00e-34	139.00
IUUC-Cne-026868	Cryptococcus neoformans	34.51	8.00e-27	114.00
IUUC-Cme-027328	Cyanidioschyzon merolae	26.64	5.00e-19	88.20
IUUC-Dre-028085	Danio rerio	39.54	4.00e-53	201.00
IUUC-Dno-030099	Dasypus novemcinctus	39.16	8.00e-53	200.00
IUUC-Dor-030324	Dipodomys ordii	35.36	2.00e-42	166.00
IUUC-Dse-031314	Dothistroma septosporum	37.99	8.00e-42	164.00
IUUC-Dme-031926	Drosophila melanogaster	37.78	2.00e-47	182.00
IUUC-Ete-032569	Echinops telfairi	36.26	2.00e-48	185.00
IUUC-Eca-033502	Equus caballus	36.88	7.00e-47	181.00
IUUC-Eeu-034883	Erinaceus europaeus	31.87	1.00e-20	92.00
IUUC-Fca-035873	Felis catus	39.16	5.00e-53	201.00
IUUC-Fal-036921	Ficedula albicollis	38.40	8.00e-53	199.00
IUUC-Fox-037765	Fusarium oxysporum	32.27	2.00e-27	116.00
IUUC-Fso-038240	Fusarium solani	32.62	1.00e-28	120.00
IUUC-Gmo-038864	Gadus morhua	38.40	1.00e-52	199.00
IUUC-Ggr-039862	Gaeumannomyces graminis	32.51	8.00e-29	120.00
IUUC-Gga-040952	Gallus gallus	38.40	1.00e-52	199.00
IUUC-Gac-041677	Gasterosteus aculeatus	39.25	2.00e-55	208.00
IUUC-Gma-043061	Glycine max	78.01	1.00e-117	415.00
IUUC-Ggo-045591	Gorilla gorilla	39.16	6.00e-53	201.00
IUUC-Hsa-046860	Homo sapiens	39.16	7.00e-53	200.00
IUUC-Hvu-047410	Hordeum vulgare	67.57	1.00e-52	197.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	39.54	2.00e-53	202.00
IUUC-Lch-049410	Latimeria chalumnae	50.77	4.00e-35	140.00
IUUC-Lpe-051102	Leersia perrieri	74.03	4.00e-104	370.00
IUUC-Loc-052016	Lepisosteus oculatus	35.74	5.00e-41	160.00
IUUC-Lma-053157	Leptosphaeria maculans	35.61	6.00e-41	160.00
IUUC-Laf-054568	Loxodonta africana	39.16	1.00e-52	199.00
IUUC-Mcc-054613	Macaca mulatta	39.16	5.00e-53	201.00
IUUC-Mor-057104	Magnaporthe oryzae	31.67	7.00e-30	124.00
IUUC-Mtr-058445	Medicago truncatula	77.13	4.00e-125	440.00
IUUC-Mla-059038	Melampsora laricipopulina	33.06	6.00e-30	124.00
IUUC-Mga-059548	Meleagris gallopavo	37.00	3.00e-43	167.00
IUUC-Mvi-060520	Microbotryum violaceum	28.69	5.00e-18	84.70
IUUC-Mdo-062376	Monodelphis domestica	38.78	7.00e-53	200.00
IUUC-Mmu-063254	Mus musculus	39.16	4.00e-53	201.00
IUUC-Mac-065635	Musa acuminata	65.96	5.00e-101	360.00
IUUC-Mpu-066314	Mustela putorius furo	39.16	5.00e-53	201.00
IUUC-Mlu-067512	Myotis lucifugus	38.78	2.00e-53	202.00
IUUC-Nfi-068262	Neosartorya fischeri	39.05	3.00e-42	165.00
IUUC-Ncr-068872	Neurospora crassa	32.98	1.00e-31	130.00
IUUC-Nle-070118	Nomascus leucogenys	39.16	5.00e-53	201.00
IUUC-Opr-071228	Ochotona princeps	38.77	1.00e-44	172.00
IUUC-Ont-072600	Oreochromis niloticus	38.78	1.00e-54	206.00
IUUC-Oan-073584	Ornithorhynchus anatinus	37.44	4.00e-44	170.00
IUUC-Ocu-074542	Oryctolagus cuniculus	39.16	2.00e-53	202.00
IUUC-Oba-075923	Oryza barthii	73.03	3.00e-106	377.00
IUUC-Obr-076313	Oryza brachyantha	73.64	2.00e-102	364.00
IUUC-Ogl-076932	Oryza glaberrima	73.03	3.00e-106	377.00
IUUC-Ogu-078152	Oryza glumaepatula	73.03	3.00e-106	377.00
IUUC-Oin-079528	Oryza indica	73.03	3.00e-106	377.00
IUUC-Olo-080401	Oryza longistaminata	73.03	3.00e-106	377.00
IUUC-Ome-081553	Oryza meridionalis	72.66	7.00e-106	376.00
IUUC-Oni-082090	Oryza nivara	72.76	2.00e-106	378.00
IUUC-Opu-083583	Oryza punctata	74.42	1.00e-103	369.00
IUUC-Oru-084492	Oryza rufipogon	73.03	3.00e-106	377.00
IUUC-Osa-085383	Oryza sativa	73.03	3.00e-106	377.00
IUUC-Ola-086835	Oryzias latipes	38.78	4.00e-55	207.00
IUUC-Olu-087716	Ostreococcus lucimarinus	37.50	1.00e-40	159.00
IUUC-Oga-088886	Otolemur garnettii	38.78	9.00e-53	200.00
IUUC-Oar-090079	Ovis aries	39.16	5.00e-53	201.00
IUUC-Ptr-091457	Pan troglodytes	39.16	7.00e-53	200.00
IUUC-Pan-092317	Papio anubis	35.71	7.00e-28	116.00
IUUC-Psi-093129	Pelodiscus sinensis	35.29	2.00e-44	172.00
IUUC-Pma-094488	Petromyzon marinus	39.54	5.00e-54	204.00
IUUC-Pno-095049	Phaeosphaeria nodorum	36.20	8.00e-42	164.00
IUUC-Ppa-095341	Physcomitrella patens	60.82	2.00e-94	338.00
IUUC-Pfo-096286	Poecilia formosa	38.78	2.00e-54	205.00
IUUC-Pab-097765	Pongo abelii	39.16	7.00e-53	200.00
IUUC-Pop-099131	Populus trichocarpa	78.84	6.00e-123	432.00
IUUC-Pca-100524	Procavia capensis	31.42	1.00e-28	119.00
IUUC-Ppe-101934	Prunus persica	79.04	2.00e-126	444.00
IUUC-Pva-102577	Pteropus vampyrus	39.16	2.00e-53	202.00
IUUC-Pgr-103521	Puccinia graminis	32.80	2.00e-31	129.00
IUUC-Pte-104304	Pyrenophora teres	36.92	9.00e-43	167.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	36.92	9.00e-43	167.00
IUUC-Rno-105717	Rattus norvegicus	39.54	9.00e-54	203.00
IUUC-Sha-107190	Sarcophilus harrisii	38.22	7.00e-50	190.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	34.42	1.00e-35	143.00
IUUC-Spo-108355	Schizosaccharomyces pombe	36.20	9.00e-38	150.00
IUUC-Smo-109374	Selaginella moellendorffii	63.53	2.00e-99	354.00
IUUC-Sit-110119	Setaria italica	72.83	5.00e-106	376.00
IUUC-Sly-111570	Solanum lycopersicum	73.20	2.00e-110	391.00
IUUC-Stu-112308	Solanum tuberosum	73.20	2.00e-116	411.00
IUUC-Sar-113515	Sorex araneus	38.54	4.00e-16	77.40
IUUC-Sbi-114605	Sorghum bicolor	72.45	2.00e-104	372.00
IUUC-Sre-114906	Sporisorium reilianum	32.83	2.00e-36	145.00
IUUC-Tgu-117087	Taeniopygia guttata	37.44	4.00e-43	167.00
IUUC-Tru-117700	Takifugu rubripes	39.16	5.00e-56	211.00
IUUC-Tni-120470	Tetraodon nigroviridis	38.40	3.00e-54	204.00
IUUC-Tca-121109	Theobroma cacao	79.38	3.00e-118	417.00
IUUC-Tre-122095	Trichoderma reesei	32.27	1.00e-27	117.00
IUUC-Tvi-122580	Trichoderma virens	32.27	1.00e-27	117.00
IUUC-Tae-125129	Triticum aestivum	69.92	1.00e-101	362.00
IUUC-Tur-126658	Triticum urartu	63.24	3.00e-91	327.00
IUUC-Tme-127043	Tuber melanosporum	37.18	1.00e-40	160.00
IUUC-Tbe-127927	Tupaia belangeri	39.16	5.00e-53	201.00
IUUC-Ttr-129231	Tursiops truncatus	39.16	2.00e-53	202.00
IUUC-Uma-129578	Ustilago maydis	33.21	2.00e-35	142.00
IUUC-Vda-129730	Verticillium dahliae	32.86	1.00e-33	137.00
IUUC-Vvi-130968	Vitis vinifera	77.59	5.00e-123	433.00
IUUC-Xtr-132203	Xenopus tropicalis	37.64	3.00e-50	191.00
IUUC-Xma-133972	Xiphophorus maculatus	38.78	2.00e-54	205.00
IUUC-Yli-134553	Yarrowia lipolytica	32.33	3.00e-29	122.00
IUUC-Zma-134941	Zea mays	70.94	1.00e-94	338.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence